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List of works by Mohan Madan Babu

2,2'-Dithio-dianiline: a redetermination at 100 K.

scientific article

2,3-Dibromo-3-(4-chloro-phen-yl)-1-(4-nitro-thio-phen-2-yl)propan-1-one

scientific article

A complex network framework for unbiased statistical analyses of DNA–DNA contact maps ⬇️

scientific article published on November 21, 2012

A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection

scientific article published in Nature Communications

A database of bacterial lipoproteins (DOLOP) with functional assignments to predicted lipoproteins

scientific article

A methodology to infer gene networks from spatial patterns of expression--an application to fluorescence in situ hybridization images

scientific article published on 17 April 2013

A million peptide motifs for the molecular biologist

scientific article published on July 2014

A time-invariant principle of genome evolution

scientific article

Adaptive evolution by optimizing expression levels in different environments

scientific article published on 13 December 2005

Affinity and competition for TBP are molecular determinants of gene expression noise

scientific article published on 2 February 2016

Alternative splicing of intrinsically disordered regions and rewiring of protein interactions

scientific article published on 22 May 2013

An expanded Oct4 interaction network: implications for stem cell biology, development, and disease

scientific article

Aortic collagen & glycosaminoglycans in Bengal gram induced alterations in atherosclerosis

scientific article published in October 1987

Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems

scientific article

Author Correction: Combinatorial expression of GPCR isoforms affects signalling and drug responses

scientific article published on 25 November 2020

Cells alter their tRNA abundance to selectively regulate protein synthesis during stress conditions

scholarly article by Marc Torrent published in September 2018

Cellular Strategies for Regulating Functional and Nonfunctional Protein Aggregation ⬇️

scientific article published on November 15, 2012

Characterizing Interhelical Interactions of G-Protein Coupled Receptors with the Fragment Molecular Orbital Method

scientific article published on 09 March 2020

Chemogenomics and biotechnology

scientific article

Classification of intrinsically disordered regions and proteins

scientific article

Classifying pairs with trees for supervised biological network inference

scientific article published on July 2015

Combinatorial expression of GPCR isoforms affects signalling and drug responses

scientific article published on 04 November 2020

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum

scientific article

Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal?

scientific article

Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast

scientific article

Computational approaches to study transcriptional regulation

scientific article published on August 2008

Conservation and evolutionary dynamics of the agr cell-to-cell communication system across firmicutes

scientific article published on 12 October 2007

Conservation of gene co-regulation in prokaryotes and eukaryotes

scientific article

Conserved Sequence Preferences Contribute to Substrate Recognition by the Proteasome

scientific article published on 17 May 2016

Constraints and consequences of the emergence of amino acid repeats in eukaryotic proteins

scientific article published on 14 August 2017

Controlling entropy to tune the functions of intrinsically disordered regions

scientific article

Cotranslational protein assembly imposes evolutionary constraints on homomeric proteins

scientific article published on 12 February 2018

Cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action

scientific article

Curcumin inhibition of bleomycin-induced pulmonary fibrosis in rats

scientific article published in September 2000

Current scenario in chemical burns in a developing country: Chennai, India ⬇️

scientific article published on March 31, 2012

DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes

scientific article published on July 2012

DOLOP--database of bacterial lipoproteins

scientific article published in April 2002

Deciphering membrane protein structures from protein sequences ⬇️

scientific article published on June 27, 2012

Discovering and understanding oncogenic gene fusions through data intensive computational approaches

scientific article

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains

scientific article

Duel of the fates: the role of transcriptional circuits and noise in CD4+ cells

scientific article published on 11 April 2012

Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity

scientific article published in 2022

Early Career Research Award Lecture. Structure, evolution and dynamics of transcriptional regulatory networks

scientific article published on October 2010

Emergence of Porcine Circovirus 2 Associated Reproductive Failure in Southern India

scientific article published on 15 September 2014

Enabling next generation systems biology: a conversation with M. Madan Babu

scientific article published on 01 December 2019

Epithelial organisation revealed by a network of cellular contacts

scientific article published on 8 November 2011

Estimating the prevalence and regulatory potential of the telomere looping effect in yeast transcription regulation

scientific article

Ethyl 4-(2,4-difluoro-phen-yl)-6-methyl-1-phenyl-2-thioxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate

scientific article

Ethyl 4-(2,4-difluoro-phen-yl)-6-methyl-2-oxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate

scientific article

Ethyl 4-(2-bromo-5-fluoro-phen-yl)-6-methyl-1-phenyl-2-thioxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate

scientific article

Eukaryotic gene regulation in three dimensions and its impact on genome evolution

scientific article

Evolution of eukaryotic genome architecture: Insights from the study of a rapidly evolving metazoan, Oikopleura dioica: Non-adaptive forces such as elevated mutation rates may influence the evolution of genome architecture

scientific article published on 17 June 2011

Evolution of fold switching in a metamorphic protein

scientific article published on 01 January 2021

Evolution of transcription factors and the gene regulatory network in Escherichia coli

scientific article

Evolution. The hidden codes that shape protein evolution

scientific article published on December 2013

Evolutionary dynamics of prokaryotic transcriptional regulatory networks

scientific article published on 28 February 2006

Evolutionary selection for protein aggregation

scientific article published on October 2012

Evolving nature of the AP2 alpha-appendage hub during clathrin-coated vesicle endocytosis

scientific article

Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions

scientific article

Exploring the environmental preference of weak interactions in (alpha/beta)8 barrel proteins

scientific article published in October 2006

Expression of fibrocyte markers by keloid fibroblasts: an insight into fibrosis during burn wound healing - a preliminary study ⬇️

scientific article published on September 30, 2012

Faculty of 1000 evaluation for A pH-regulated quality control cycle for surveillance of secretory protein assembly

Faculty of 1000 evaluation for MBNL proteins repress ES-cell-specific alternative splicing and reprogramming

Faculty of 1000 evaluation for Membraneless organelles can melt nucleic acid duplexes and act as biomolecular filters

Faculty of 1000 evaluation for Transcriptome-wide regulation of pre-mRNA splicing and mRNA localization by muscleblind proteins

Fcγ Receptor I Alpha Chain (CD64) Expression in Macrophages Is Critical for the Onset of Meningitis by Escherichia coli K1 ⬇️

scientific article published on November 18, 2010

Fibronectin is overproduced by keloid fibroblasts during abnormal wound healing

scientific article published on April 1989

From prioritisation to understanding: mechanistic predictions of variant effects

scientific article published on 20 December 2018

Function and Regulation of Phase-Separated Biological Condensates

scientific article published on 2 February 2018

Functional determinants of transcription factors in Escherichia coli: protein families and binding sites

scientific article

Gene regulatory network growth by duplication

scientific article

General trends in the evolution of prokaryotic transcriptional regulatory networks

scientific article published on January 2007

Genomic analysis of regulatory network dynamics reveals large topological changes

scientific article

Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture

scientific article published on 18 August 2009

Genomic neighbourhood and the regulation of gene expression

scientific article published on 20 May 2010

Handling of insulin by the isolated perfused rat kidney

scientific article published in April 1981

High voltage electrical burn injuries in teenage children: case studies with similarities (an Indian perspective)

scientific article published on September 2013

High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes

scientific article published on 18 September 2007

High-throughput discovery of functional disordered regions: investigation of transactivation domains.

scientific article

How do disordered regions achieve comparable functions to structured domains?

scientific article

Independence of repressive histone marks and chromatin compaction during senescent heterochromatic layer formation

scientific article

Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli

scientific article

Intrinsically Disordered Proteins Adaptively Reorganize Cellular Matter During Stress

scientific article published on 6 May 2017

Intrinsically disordered proteins: regulation and disease

scientific article published on 20 April 2011

Intrinsically disordered segments affect protein half-life in the cell and during evolution

scientific article

Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements

scientific article published on 18 May 2009

Investigations on C-H...pi interactions in RNA binding proteins

scientific article published on 7 March 2007

Keloids and hypertrophic scars: a review

article

Low molecular weight heparin mediated regulation of nitric oxide synthase during burn wound healing ⬇️

scientific article published on March 31, 2011

Low molecular weight heparin-induced pharmacological modulation of burn wound healing

scientific article published on September 2006

Mechanisms of signalling and biased agonism in G protein-coupled receptors

scientific article published on 01 October 2018

Mechanistic insight into site-restricted monoubiquitination of FANCD2 by Ube2t, FANCL, and FANCI

scientific article

Methods to reconstruct and compare transcriptional regulatory networks

scientific article published on January 2009

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer

scientific article published on August 2016

Molecular determinants of ligand efficacy and potency in GPCR signaling

scientific article published on 21 December 2023

Molecular determinants underlying functional innovations of TBP and their impact on transcription initiation

scientific article published on 13 May 2020

Molecular mechanism of modulating arrestin conformation by GPCR phosphorylation.

scientific article

Molecular signatures of G-protein-coupled receptors

scientific article

NCI: A server to identify non-canonical interactions in protein structures.

scientific article

Network Biology editorial 2013.

scientific article

Network-based approaches for linking metabolism with environment

scientific article

Paediatric burns severity index scoring to predict mortality.

scientific article published on September 2014

Pharmacogenomics of GPCR Drug Targets

scientific article published on 8 December 2017

Predicting the strongest domain-domain contact in interacting protein pairs

scientific article

Principles of transcriptional regulation and evolution of the metabolic system in E. coli

scientific article published on 3 October 2008

Profile of burn sepsis challenges and outcome in an exclusive children's hospital in Chennai, India ⬇️

scientific article published on March 31, 2012

Promiscuity as a functional trait: intrinsically disordered regions as central players of interactomes

scientific article published on September 2013

Proteome response at the edge of protein aggregation

scientific article published on February 2015

Proteomic analysis of mitotic RNA polymerase II reveals novel interactors and association with proteins dysfunctional in disease

scientific article

Recognition pliability is coupled to structural heterogeneity: a calmodulin intrinsically disordered binding region complex

scientific article published in March 2012

Registering alpha-helices and beta-strands using backbone C-H...O interactions

scientific article published in May 2003

Renal dysfunction in primary hyperparathyroidism; effect of Parathyroidectomy: A retrospective Cohort Study

scientific article published on 5 November 2016

Response of keloid fibroblasts to Vitamin D3 and quercetin treatment - in vitro study

scientific article published on September 2015

SEM and raman spectroscopy of multiwalled carbon nanotubes grown by novel technique of ash supported catalysts

scientific article

Sequence composition of disordered regions fine-tunes protein half-life

scientific article

Shigella apyrase--a novel variant of bacterial acid phosphatases?

scientific article published in February 2002

Simultaneous quantification of protein order and disorder

scientific article published in March 2017

Solitary and repetitive binding motifs for the AP2 complex alpha-appendage in amphiphysin and other accessory proteins

scientific article

Spial: analysis of subtype-specific features in multiple sequence alignments of proteins

scientific article

Statistical analysis of domains in interacting protein pairs

scientific article

Structural polymorphism in the N-terminal oligomerization domain of NPM1

scientific article

Structure and evolution of transcriptional regulatory networks

scientific article

Structured and disordered facets of the GPCR fold

scientific article published on August 2014

Study on biofilm formation in burn wound infection in a pediatric hospital in Chennai, India

scientific article published on December 2016

Subunit-selective N-terminal domain associations organize the formation of AMPA receptor heteromers

scientific article

The HIRAN domain and recruitment of chromatin remodeling and repair activities to damaged DNA.

scientific article

The chemotherapeutic CX-5461 primarily targets TOP2B and exhibits selective activity in high-risk neuroblastoma

scientific article published on 09 November 2021

The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease

scientific article

The fitness cost and benefit of phase-separated protein deposits

scientific article published on 08 April 2019

The genome of the social amoeba Dictyostelium discoideum

scientific article

The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome

scientific article

The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons

scientific article (publication date: 2006)

The rules of disorder or why disorder rules

scientific article published on February 2009

Tight regulation of unstructured proteins: from transcript synthesis to protein degradation

scientific article

Tissue-specific splicing of disordered segments that embed binding motifs rewires protein interaction networks

scientific article published on June 2012

Transcriptional control of the quorum sensing response in yeast

scientific article

Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes

scholarly article

Ultrastructural differentiation of abnormal scars ⬇️

scientific article published on June 30, 2005

Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks

scientific article

Universal allosteric mechanism for Gα activation by GPCRs

scientific article published on 6 July 2015

Unreported location and presentation for a parasitic ovarian dermoid cyst in an indirect inguinal hernia ⬇️

scientific article published on September 9, 2011

Use of host-like peptide motifs in viral proteins is a prevalent strategy in host-virus interactions

scientific article published on 29 May 2014

Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity

scientific article

Visualization and analysis of non-covalent contacts using the Protein Contacts Atlas.

scientific article published on 15 January 2018

What's in a name? Why these proteins are intrinsically disordered: Why these proteins are intrinsically disordered

scientific article

Whole genome sequencing highlights genetic changes associated with laboratory domestication of C. elegans

scientific article

Xpf and not the Fanconi anaemia proteins or Rev3 accounts for the extreme resistance to cisplatin in Dictyostelium discoideum

scientific article

p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response

scientific article

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