List of works by Miguel Vazquez

3DEM Loupe: Analysis of macromolecular dynamics using structures from electron microscopy.

scientific article published on 13 May 2013

A user guide for the online exploration and visualization of PCAWG data

scientific article published on 07 July 2020

CHEMDNER: The drugs and chemical names extraction challenge

scientific article

CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets

scientific article published on 19 April 2017

Chapter 14: Cancer genome analysis

scientific article

CheNER: chemical named entity recognizer.

scientific article

ChiPPI: a novel method for mapping chimeric protein-protein interactions uncovers selection principles of protein fusion events in cancer

scientific article

Computational approaches to identify functional genetic variants in cancer genomes

scientific article published on August 2013

Exome sequencing identifies recurrent mutations of the splicing factor SF3B1 gene in chronic lymphocytic leukemia

scientific article

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information

scientific article published on 22 May 2009

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience

scientific article (publication date: 2012)

KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily

scientific article

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures

scientific article

Named Entity Recognition and Normalization: A Domain-Specific Language Approach

Pathway and network analysis of cancer genomes

scientific article (publication date: July 2015)

Pathway and network analysis of more than 2,500 whole cancer genomes

Pathway and network analysis of more than 2500 whole cancer genomes

scientific article published on 05 February 2020

Patient Dossier: Healthcare queries over distributed resources

scientific article published on 17 October 2019

Prioritization of pathogenic mutations in the protein kinase superfamily

scientific article

Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy.

scientific article published on 13 October 2013

SENT: semantic features in text

scientific article published on 20 May 2009

Somatic Embryonic FGFR2 Mutations in Keratinocytic Epidermal Nevi.

scientific article

Structure-PPi: a module for the annotation of cancer-related single-nucleotide variants at protein-protein interfaces

scientific article

Text Mining

Text Mining for Drugs and Chemical Compounds: Methods, Tools and Applications

scientific article

The CHEMDNER corpus of chemicals and drugs and its annotation principles

scientific article

The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge

scientific article

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

scientific article

bioNMF: a web-based tool for nonnegative matrix factorization in biology.

scientific article published on 30 May 2008

wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases.

scientific article published on 7 October 2015

wKinMut: an integrated tool for the analysis and interpretation of mutations in human protein kinases

scientific article

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