List of works - Chiara Damiani

A stochastic model of catalytic reaction networks in protocells ⬇️

article

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

scientific article published on 4 February 2016

Cell-cell interaction and diversity of emergent behaviours.

scientific article published in March 2011

Computational strategies for a system-level understanding of metabolism

scientific article

Divergent in vitro/in vivo responses to drug treatments of highly aggressive NIH-Ras cancer cells: a PET imaging and metabolomics-mass-spectrometry study.

scientific article published on 07 July 2016

Dynamical properties of a boolean model of gene regulatory network with memory

scientific article

GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction

scientific article published on 08 November 2021

Growth and division in a dynamic protocell model

scientific article published on 3 December 2014

INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation

scientific article published on 07 February 2022

Information Transfer among Coupled Random Boolean Networks

article published in 2010

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism

scientific article published on 28 February 2019

Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model

On RAF Sets and Autocatalytic Cycles in Random Reaction Networks ⬇️

article published in 2014

Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks

scientific article

The Diffusion of Perturbations in a Model of Coupled Random Boolean Networks

article

Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models

scientific article published on 14 March 2016

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis.

scientific article published on July 2017

List of works by Chiara Damiani

A stochastic model of catalytic reaction networks in protocells ⬇️

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

Cell-cell interaction and diversity of emergent behaviours.

Computational strategies for a system-level understanding of metabolism

Divergent in vitro/in vivo responses to drug treatments of highly aggressive NIH-Ras cancer cells: a PET imaging and metabolomics-mass-spectrometry study.

Dynamical properties of a boolean model of gene regulatory network with memory

GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction

Growth and division in a dynamic protocell model

INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation

Information Transfer among Coupled Random Boolean Networks

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism

Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model

On RAF Sets and Autocatalytic Cycles in Random Reaction Networks ⬇️

Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks

The Diffusion of Perturbations in a Model of Coupled Random Boolean Networks

Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis.