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List of works by Marco S. Nobile

A GPU-Based Multi-swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series

A memetic hybrid method for the Molecular Distance Geometry Problem with incomplete information

A novel framework for MR image segmentation and quantification by using MedGA

scientific article published on 17 April 2019

Computational strategies for a system-level understanding of metabolism

scientific article

Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs

article

Evolutionary inference of biochemical reaction networks accelerated on graphics processing units

article published in 2013

FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks

scientific article published on 09 September 2021

Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells

scientific article published on 01 April 2020

GPU-accelerated simulations of mass-action kinetics models with cupSODA

article

Gillespie’s Stochastic Simulation Algorithm on MIC coprocessors

Graphics processing units in bioinformatics, computational biology and systems biology.

scientific article

Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization

scientific article published on 16 June 2014

Parallel implementation of efficient search schemes for the inference of cancer progression models ⬇️

Parallelizing Biochemical Stochastic Simulations: A Comparison of GPUs and Intel Xeon Phi Processors

Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization

Simulation and Analysis of the Blood Coagulation Cascade Accelerated on GPU

Surfing on Fitness Landscapes: A Boost on Optimization by Fourier Surrogate Modeling

scientific article published on 29 February 2020

cuProCell: GPU-accelerated analysis of cell proliferation with flow cytometry data

scientific article published on 29 June 2020

cuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systems

scientific article

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