List of works - Philipp J Keller

<ce:italic>In Toto</ce:italic> Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level

A computational statistics approach for estimating the spatial range of morphogen gradients

scientific article

A general method to fine-tune fluorophores for live-cell and in vivo imaging

scientific article published on 4 September 2017

A practical guide to adaptive light-sheet microscopy

scientific article published on 01 November 2018

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

scientific article

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples

scientific article published on 05 August 2019

Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.

scientific article published on 30 November 2018

Characterization of a common progenitor pool of the epicardium and myocardium

scientific article published on 07 January 2021

Development of the annelid axochord: insights into notochord evolution

scientific article published in September 2014

Digital scanned laser light sheet fluorescence microscopy

scientific article

Digital scanned laser light-sheet fluorescence microscopy (DSLM) of zebrafish and Drosophila embryonic development

scientific article

Direct In Vivo Manipulation and Imaging of Calcium Transients in Neutrophils Identify a Critical Role for Leading-Edge Calcium Flux

scientific article

Efficient processing and analysis of large-scale light-sheet microscopy data

scientific article

Emerging Imaging and Genomic Tools for Developmental Systems Biology

scientific article published on March 2016

Evolution of mutational robustness in the yeast genome: a link to essential genes and meiotic recombination hotspots

scientific article (publication date: June 2009)

Fast and robust optical flow for time-lapse microscopy using super-voxels

scientific article

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

scientific article

Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy

scientific article

Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis

scientific article published on 30 September 2019

How to Make a Worm Twitch

scientific article published in May 2017

Imaging far and wide

scientific article published on 23 September 2016

Imaging morphogenesis: technological advances and biological insights

scientific article published on June 2013

In vivo imaging of zebrafish embryogenesis

scientific article

Life sciences require the third dimension

scientific article

Light sheet microscopy in cell biology

scientific article published on January 2013

Light sheet microscopy of living or cleared specimens

scientific article published on 16 September 2011

Light sheet-based imaging and analysis of early embryogenesis in the fruit fly.

scientific article published in January 2015

Light-sheet functional imaging in fictively behaving zebrafish

scientific article

Light-sheet imaging for systems neuroscience

scientific article published on January 2015

Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools

scientific article

Live imaging of nervous system development and function using light-sheet microscopy

scientific article published on 31 August 2013

Live imaging of whole mouse embryos during gastrulation: migration analyses of epiblast and mesodermal cells

scientific article (publication date: 2013)

Making biology transparent

scientific article

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

scientific article published on 29 March 2018

New technologies in imaging

scientific article published in March 2013

Nlcam modulates midline convergence during anterior neural plate morphogenesis

scientific article published on 11 December 2009

Nuclear crowding and nonlinear diffusion during interkinetic nuclear migration in the zebrafish retina

scientific article published on 06 October 2020

Nud1p, the yeast homolog of Centriolin, regulates spindle pole body inheritance in meiosis

scientific article

Proper migration and axon outgrowth of zebrafish cranial motoneuron subpopulations require the cell adhesion molecule MDGA2A

scientific article

Publisher Correction: Tissue clearing and its applications in neuroscience

scientific article published on 09 March 2020

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

scientific article

Quantitative in vivo imaging of entire embryos with Digital Scanned Laser Light Sheet Fluorescence Microscopy

scientific article

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

scientific article

Reconstructing embryonic development

scientific article

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

scientific article

Repulsive cues combined with physical barriers and cell-cell adhesion determine progenitor cell positioning during organogenesis

scientific article

Segregation of yeast nuclear pores.

scientific article published in July 2010

Shedding light on the system: studying embryonic development with light sheet microscopy

scientific article published on 19 August 2011

Spore number control and breeding inSaccharomyces cerevisiae

scientific article (publication date: 14 November 2005)

Stochastic electrotransport selectively enhances the transport of highly electromobile molecules

scientific article

Tandem fluorescent protein timers for in vivo analysis of protein dynamics

scientific article published on 24 June 2012

The PAR complex controls the spatiotemporal dynamics of F-actin and the MTOC in directionally migrating leukocytes

scientific article

Three-dimensional microtubule behavior in Xenopus egg extracts reveals four dynamic states and state-dependent elastic properties

scientific article

Three-dimensional preparation and imaging reveal intrinsic microtubule properties

scientific article

Tissue clearing and its applications in neuroscience

scientific article published on 01 February 2020

Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy

scientific article published on 29 April 2013

Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy

scientific article published on February 2015

Whole-animal functional and developmental imaging with isotropic spatial resolution

scientific article

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

scientific article

Whole-central nervous system functional imaging in larval Drosophila

scientific article

List of works by Philipp J Keller

<ce:italic>In Toto</ce:italic> Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level

A computational statistics approach for estimating the spatial range of morphogen gradients

A general method to fine-tune fluorophores for live-cell and in vivo imaging

A practical guide to adaptive light-sheet microscopy

Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms

BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples

Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function.

Characterization of a common progenitor pool of the epicardium and myocardium

Development of the annelid axochord: insights into notochord evolution

Digital scanned laser light sheet fluorescence microscopy

Digital scanned laser light-sheet fluorescence microscopy (DSLM) of zebrafish and Drosophila embryonic development

Direct In Vivo Manipulation and Imaging of Calcium Transients in Neutrophils Identify a Critical Role for Leading-Edge Calcium Flux

Efficient processing and analysis of large-scale light-sheet microscopy data

Emerging Imaging and Genomic Tools for Developmental Systems Biology

Evolution of mutational robustness in the yeast genome: a link to essential genes and meiotic recombination hotspots

Fast and robust optical flow for time-lapse microscopy using super-voxels

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy

Histone H3K27 acetylation precedes active transcription during zebrafish zygotic genome activation as revealed by live-cell analysis

How to Make a Worm Twitch

Imaging far and wide

Imaging morphogenesis: technological advances and biological insights

In vivo imaging of zebrafish embryogenesis

Life sciences require the third dimension

Light sheet microscopy in cell biology

Light sheet microscopy of living or cleared specimens

Light sheet-based imaging and analysis of early embryogenesis in the fruit fly.

Light-sheet functional imaging in fictively behaving zebrafish

Light-sheet imaging for systems neuroscience

Live imaging and quantitative analysis of gastrulation in mouse embryos using light-sheet microscopy and 3D tracking tools

Live imaging of nervous system development and function using light-sheet microscopy

Live imaging of whole mouse embryos during gastrulation: migration analyses of epiblast and mesodermal cells

Making biology transparent

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

New technologies in imaging

Nlcam modulates midline convergence during anterior neural plate morphogenesis

Nuclear crowding and nonlinear diffusion during interkinetic nuclear migration in the zebrafish retina

Nud1p, the yeast homolog of Centriolin, regulates spindle pole body inheritance in meiosis

Proper migration and axon outgrowth of zebrafish cranial motoneuron subpopulations require the cell adhesion molecule MDGA2A

Publisher Correction: Tissue clearing and its applications in neuroscience

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

Quantitative in vivo imaging of entire embryos with Digital Scanned Laser Light Sheet Fluorescence Microscopy

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos

Reconstructing embryonic development

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

Repulsive cues combined with physical barriers and cell-cell adhesion determine progenitor cell positioning during organogenesis

Segregation of yeast nuclear pores.

Shedding light on the system: studying embryonic development with light sheet microscopy

Spore number control and breeding inSaccharomyces cerevisiae

Stochastic electrotransport selectively enhances the transport of highly electromobile molecules

Tandem fluorescent protein timers for in vivo analysis of protein dynamics

The PAR complex controls the spatiotemporal dynamics of F-actin and the MTOC in directionally migrating leukocytes

Three-dimensional microtubule behavior in Xenopus egg extracts reveals four dynamic states and state-dependent elastic properties

Three-dimensional preparation and imaging reveal intrinsic microtubule properties

Tissue clearing and its applications in neuroscience

Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy

Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy

Whole-animal functional and developmental imaging with isotropic spatial resolution

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

Whole-central nervous system functional imaging in larval Drosophila