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List of works by Annelies Haegeman

A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses

scientific article published on 15 April 2021

An endosymbiotic bacterium in a plant-parasitic nematode: member of a new Wolbachia supergroup

scientific article

Analysis of the transcriptome of Hirschmanniella oryzae to explore potential survival strategies and host-nematode interactions.

scientific article published on 27 November 2013

Analysis of the transcriptome of the root lesion nematode Pratylenchus coffeae generated by 454 sequencing technology.

scientific article published on 12 April 2011

Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea.

scientific article

Biological, physicochemical and plant health responses in lettuce and strawberry in soil or peat amended with biochar

article

Characterization of a putative endoxylanase in the migratory plant-parasitic nematode Radopholus similis.

scientific article published in May 2009

Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology

scientific article

Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

scientific article

Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice

scientific article published on 20 December 2011

Complex patterns in tolerance and resistance to pests and diseases underpin the domestication of tomato

scientific article published on 31 December 2019

Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units

scientific article published on 22 October 2020

Degradation of the Plant Cell Wall by Nematodes

article

Detection of Macrobenthos Species With Metabarcoding Is Consistent in Bulk DNA but Dependent on Body Size and Sclerotization in eDNA From the Ethanol Preservative

scientific article published on 15 June 2021

Dynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf Infection

scientific article (publication date: 2016)

Effects of bioavailable phosphorus and soil biota on typical Nardus grassland species in competition with fast-growing plant species

scientific article published on 17 September 2020

Effects of synthetic fertilizer and farm compost on soil nematode community in long-term crop rotation plots: A morphological and metabarcoding approach

scientific article published on 17 March 2020

Emerging molecular knowledge on Radopholus similis, an important nematode pest of banana

scientific article published on May 2010

Evolution of GHF5 endoglucanase gene structure in plant-parasitic nematodes: no evidence for an early domain shuffling event

scientific article

Exploring the methanogen and bacterial communities of rumen environments: solid adherent, fluid and epimural.

scientific article published on 22 December 2016

Expressed sequence tags of the peanut pod nematode Ditylenchus africanus: the first transcriptome analysis of an Anguinid nematode

scientific article published on 19 April 2009

Four transthyretin-like genes of the migratory plant-parasitic nematode Radopholus similis: members of an extensive nematode-specific family

scientific article

Functional roles of effectors of plant-parasitic nematodes

scientific article published on 29 October 2011

Horizontal gene transfer in nematodes: a catalyst for plant parasitism?

scientific article published on August 2011

Identification of candidate effector genes in the transcriptome of the rice root knot nematode Meloidogyne graminicola.

scientific article published on 28 December 2012

Impact of Cross-Contamination Concentrations of Doxycycline Hyclate on the Microbial Ecosystem in an Ex Vivo Model of the Pig's Cecum

scientific article published on 19 September 2018

Monitoring of spatio-temporal occupancy patterns of fish and amphibian species in a lentic aquatic system using environmental DNA

scientific article published on 21 November 2020

New Insights Into Nematode DNA-metabarcoding as Revealed by the Characterization of Artificial and Spiked Nematode Communities

scientific article published in 2019

Occurrence of DNA methylation in Daphnia magna and influence of multigeneration Cd exposure

scientific article published on 26 February 2009

Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)

scientific article published on 01 February 2019

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica ⬇️

scientific article published on 29 December 2020

RETRACTED ARTICLE: Molecular cloning and expression analysis of novel putative effector genes from Meloidogyne graminicola

retracted scientific article published on 12 July 2013

Redirection of auxin flow in Arabidopsis thaliana roots after infection by root-knot nematodes

scientific article published on 15 June 2016

Reduced-Particle-Size Wheat Bran Is Efficiently Colonized by a Lactic Acid-Producing Community and Reduces Levels of Enterobacteriaceae in the Cecal Microbiota of Broilers.

scientific article published on 17 October 2018

Structural and functional investigation of a secreted chorismate mutase from the plant-parasitic nematode Heterodera schachtii in the context of related enzymes from diverse origins

scientific article published in March 2009

Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions

scientific article published on 18 April 2020

Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea.

scientific article

The Globodera pallida SPRYSEC Effector GpSPRY-414-2 That Suppresses Plant Defenses Targets a Regulatory Component of the Dynamic Microtubule Network

scientific article published on 12 July 2018

The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses

scientific article published on 28 September 2018

The Use of High-Throughput Sequencing for the Study and Diagnosis of Plant Viruses and Viroids in Pollen.

scientific article

The role of pseudo-endoglucanases in the evolution of nematode cell wall-modifying proteins

scientific article published on 23 April 2010

To blend or not to blend? The role of morphological traits for the detection of marine macrobenthos in bulk DNA and eDNA from the ethanol preservative

scientific article published on 04 March 2021

Top 10 plant-parasitic nematodes in molecular plant pathology.

scientific article published on July 2013

Transcriptional analysis through RNA sequencing of giant cells induced by Meloidogyne graminicola in rice roots

scientific article

Transcriptional reprogramming by root knot and migratory nematode infection in rice

scientific article published on 17 September 2012

Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing.

scientific article

Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation

scientific article published on 01 July 2021

Virus detection by high-throughput sequencing of small RNAs: large scale performance testing of sequence analysis strategies

scientific article published on 07 February 2019

Whole-Genome Deep Sequencing Reveals Host-Driven in-planta Evolution of Columnea Latent Viroid (CLVd) Quasi-Species Populations

scientific article published on 05 May 2020

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