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Authors whose works are in public domain in at least one jurisdiction

List of works by Patrice Koehl

A brighter future for protein structure prediction

scientific article (publication date: February 1999)

A quality metric for homology modeling: the H-factor.

scientific article

A weighted string kernel for protein fold recognition

scientific article published on 25 August 2017

ASTRAL compendium enhancements

scientific article

Ab initio sampling of transition paths by conditioned Langevin dynamics.

scientific article published in October 2017

Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling.

scientific article

Adaptive skin meshes coarsening for biomolecular simulation ⬇️

scientific article published on June 1, 2011

Algorithmic issues in modeling motion

An analytical method for computing atomic contact areas in biomolecules.

scientific article

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

scientific article published on 10 June 2011

Combined approaches from physics, statistics, and computer science for ab initio protein structure prediction: ex unitate vires (unity is strength)?

scientific article published on 24 July 2018

Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.

scientific article

Computational assembly of polymorphic amyloid fibrils reveals stable aggregates

scientific article published on February 2013

Computing ion solvation free energies using the dipolar Poisson model

scientific article published on April 2009

DCG++: A data-driven metric for geometric pattern recognition

scientific article published on 06 June 2019

Electrostatics calculations: latest methodological advances

scientific article

Extracting knowledge from protein structure geometry ⬇️

scientific article published on February 27, 2013

Fast Recursive Computation of 3D Geometric Moments from Surface Meshes ⬇️

scientific article published on November 1, 2012

Geometric measures of large biomolecules: Surface, volume, and pockets ⬇️

scientific article published on August 8, 2011

Improved recognition of native-like protein structures using a family of designed sequences

scientific article

Independent saturation of three TrpRS subsites generates a partially assembled state similar to those observed in molecular simulations

scientific article

Influence of protein structure databases on the predictive power of statistical pair potentials ⬇️

scientific article published on May 1, 1998

Large Eigenvalue Problems in Coarse-Grained Dynamic Analyses of Supramolecular Systems

scientific article published on 20 June 2018

MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences

scientific article

MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape

scientific article published on June 2007

Minimum action principle and shape dynamics

scientific article

Minimum action transition paths connecting minima on an energy surface.

scientific article published in November 2016

Modelling the dynamics of an antigenic peptide using NMR relaxation data.

scientific article

Multi-scale clustering by building a robust and self correcting ultrametric topology on data points

scientific article

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

scientific article published on July 2006

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics

scientific article published on July 2006

PackHelix: A tool for helix‐sheet packing during protein structure prediction ⬇️

scientific article published on August 23, 2011

Parameterizing elastic network models to capture the dynamics of proteins

scientific article published on 12 June 2021

Plant NBS-LRR proteins: adaptable guards

scientific article

Protein topology and stability define the space of allowed sequences.

scientific article

Refined crystallographic structure of Pseudomonas aeruginosa exotoxin A and its implications for the molecular mechanism of toxicity

scientific article

Relaxed specificity in aromatic prenyltransferases

scientific article

Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential

scientific article

Sampling the conformation of protein surface residues for flexible protein docking ⬇️

scientific article published on November 23, 2010

Selective and specific ion binding on proteins at physiologically-relevant concentrations

scientific article

Sequence variations within protein families are linearly related to structural variations.

scientific article

Small libraries of protein fragments model native protein structures accurately.

scientific article

Solution structure of PMP-D2, a 35-residue peptide isolated from the insect Locusta migratoria.

scientific article published in December 1994

String kernels for protein sequence comparisons: improved fold recognition

scientific article

Structural basis for ion permeation mechanism in pentameric ligand-gated ion channels

scientific article

Surface‐histogram: A new shape descriptor for protein‐protein docking ⬇️

scientific article published on November 9, 2011

The ASTRAL Compendium in 2004

scientific article

The Renormalization Group and Its Applications to Generating Coarse-Grained Models of Large Biological Molecular Systems

scientific article published on 7 February 2017

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