List of works - Frédéric Chalmel

Adult female rats perinatally exposed to perfluorohexane sulfonate (PFHxS) and a mixture of endocrine disruptors display increased body/fat weights without a transcriptional footprint in fat cells

scientific article published on 30 December 2020

An atlas of chromatoid body components

scientific article published on 19 February 2014

An integrative omics strategy to assess the germ cell secretome and to decipher sertoli-germ cell crosstalk in the Mammalian testis

scientific article

Androgen-regulated microRNA-135a decreases prostate cancer cell migration and invasion through downregulating ROCK1 and ROCK2.

scientific article

Author Correction: Characterisation and localisation of the endocannabinoid system components in the adult human testis

scientific article published on 22 January 2020

C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human

scientific article

CLPH, a novel casein kinase 2-phosphorylated disordered protein, is specifically associated with postmeiotic germ cells in rat spermatogenesis

scientific journal article

Characterisation and localisation of the endocannabinoid system components in the adult human testis

scientific article published on 19 September 2019

Characterization of Glyceollins as Novel Aryl Hydrocarbon Receptor Ligands and Their Role in Cell Migration

scientific article published on 18 February 2020

Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes

scientific article

Cold/menthol TRPM8 receptors initiate the cold-shock response and protect germ cells from cold-shock-induced oxidation

scientific article

Combined RNA/tissue profiling identifies novel Cancer/testis genes

scientific article published on 23 June 2021

Combining RNA and protein profiling data with network interactions identifies genes associated with spermatogenesis in mouse and human

scientific article

Correction: Systemic Compensatory Response to Neonatal Estradiol Exposure Does Not Prevent Depletion of the Oocyte Pool in the Rat.

scientific article published on 2 January 2014

Cross-platform gene expression signature of human spermatogenic failure reveals inflammatory-like response.

scientific article

Cytosine modifications modulate the chromatin architecture of transcriptional enhancers

scientific article published on 10 April 2017

DICER Regulates the Formation and Maintenance of Cell-Cell Junctions in the Mouse Seminiferous Epithelium.

scientific article

Deciphering the Molecular Mechanisms Sustaining the Estrogenic Activity of the Two Major Dietary Compounds Zearalenone and Apigenin in ER-Positive Breast Cancer Cell Lines

scientific article published on 22 January 2019

Defining the human sperm microtubulome: an integrated genomics approach

scientific article published on January 2017

Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton

scientific article

Differential proteomic analysis of the mouse retina: the induction of crystallin proteins by retinal degeneration in the rd1 mouse

scientific article

Distinct Transcriptional Profiles of the Female, Male, and Finasteride-Induced Feminized Male Anogenital Region in Rat Fetuses

scientific article published on 01 May 2019

Dynamics of the transcriptional landscape during human fetal testis and ovary development

scientific article published on 15 May 2020

Endogenous IL-33 Deficiency Exacerbates Liver Injury and Increases Hepatic Influx of Neutrophils in Acute Murine Viral Hepatitis

scientific article

Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes

scientific article

Evaluation of apoptotic- and autophagic-related protein expressions before and after IVM of fresh, slow-frozen and vitrified pre-pubertal mouse testicular tissue

scientific article published on 11 October 2017

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6

scientific article

Exploiting advances in transcriptomics to improve on human-relevant toxicology

Expression of HLA-G by mast cells is associated with hepatitis C virus-induced liver fibrosis

scientific article published on 12 September 2013

Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo

scientific article published on 12 January 2004

Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis.

scientific article

Expression screening of cancer/testis genes in prostate cancer identifies NR6A1 as a novel marker of disease progression and aggressiveness

scientific article published on 26 March 2013

Fhl5/Act, a CREM-binding transcriptional activator required for normal sperm maturation and morphology, is not essential for testicular gene expression

scientific article

Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells

scientific article published on 10 September 2014

GOAnno: GO annotation based on multiple alignment

scientific article published on 12 January 2005

GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development

scientific article

Genome-Wide Transcriptional and Functional Analysis of Human T Lymphocytes Treated with Benzo[]pyrene ⬇️

scientific article published on 17 November 2018

Genome‐wide identification of Sox8‐, and Sox9‐dependent genes during early post‐natal testis development in the mouse ⬇️

scientific article published on January 13, 2013

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle

scientific article (publication date: 2010)

Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility.

scientific article

Glyceollins trigger anti-proliferative effects through estradiol-dependent and independent pathways in breast cancer cells

scientific article

High-Resolution Profiling of Novel Transcribed Regions During Rat Spermatogenesis1

scientific article published on 16 April 2014

Identification and characterization of rod-derived cone viability factor

scientific article

Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis

article

Interplay between transcription regulators RUNX1 and FUBP1 activates an enhancer of the oncogene c-KIT and amplifies cell proliferation.

scientific article

Linking transcriptomics and proteomics in spermatogenesis

scientific article

Meiotic Genes Are Enriched in Regions of Reduced Archaic Ancestry.

scientific article published on 21 April 2017

New transcriptomic tools to understand testis development and functions

scientific article published on 01 March 2018

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows

scientific article published on 12 May 2016

PipeAlign: A new toolkit for protein family analysis

scientific article

Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program

scientific article published on 24 January 2006

Profiling of androgen response in rainbow trout pubertal testis: relevance to male gonad development and spermatogenesis

scientific article

Profiling spermatogenic failure in adult testes bearing Sox9-deficient Sertoli cells identifies genes involved in feminization, inflammation and stress.

scientific article

PromAn: an integrated knowledge-based web server dedicated to promoter analysis

scientific article

Proteomics and integrative genomics for unraveling the mysteries of spermatogenesis: the strategies of a team.

scientific article published on 18 April 2014

RUNX1 maintains the identity of the fetal ovary through an interplay with FOXL2

scientific article published on 11 November 2019

Research resource: the dynamic transcriptional profile of sertoli cells during the progression of spermatogenesis.

scientific article

Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential

scientific article

Role of miR-34c microRNA in the late steps of spermatogenesis

scientific article

Sperm proteins and cancer-testis antigens are released by the seminiferous tubules in mice and men

scientific article published on 01 March 2021

Systemic compensatory response to neonatal estradiol exposure does not prevent depletion of the oocyte pool in the rat.

scientific article

TOXsIgN: a cross-species repository for toxicogenomic signatures.

scientific article published on 27 January 2018

Temporally regulated traffic of HuR and its associated ARE-containing mRNAs from the chromatoid body to polysomes during mouse spermatogenesis

scientific article

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology

scientific article

The Male Fertility Gene Atlas: a web tool for collecting and integrating OMICS data in the context of male infertility

scientific article published on 06 August 2020

The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community

scientific article published on 01 September 2019

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

scientific article published on 16 April 2015

The conserved transcriptome in human and rodent male gametogenesis

scholarly article

The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine.

scientific article published on 30 October 2015

Toward understanding the core meiotic transcriptome in mammals and its implications for somatic cancer.

scientific article published on 02 October 2007

Transcriptome analysis of fetal rat testis following intrauterine exposure to the azole fungicides triticonazole and flusilazole reveals subtle changes despite adverse endocrine effects

scientific article published on 01 October 2020

Understanding the Underlying Molecular Mechanisms of Meiotic Arrest during In Vitro Spermatogenesis in Rat Prepubertal Testicular Tissue

scientific article published on 24 May 2022

goCluster integrates statistical analysis and functional interpretation of microarray expression data.

scientific article

List of works by Frédéric Chalmel

Adult female rats perinatally exposed to perfluorohexane sulfonate (PFHxS) and a mixture of endocrine disruptors display increased body/fat weights without a transcriptional footprint in fat cells

An atlas of chromatoid body components

An integrative omics strategy to assess the germ cell secretome and to decipher sertoli-germ cell crosstalk in the Mammalian testis

Androgen-regulated microRNA-135a decreases prostate cancer cell migration and invasion through downregulating ROCK1 and ROCK2.

Author Correction: Characterisation and localisation of the endocannabinoid system components in the adult human testis

C2orf62 and TTC17 are involved in actin organization and ciliogenesis in zebrafish and human

CLPH, a novel casein kinase 2-phosphorylated disordered protein, is specifically associated with postmeiotic germ cells in rat spermatogenesis

Characterisation and localisation of the endocannabinoid system components in the adult human testis

Characterization of Glyceollins as Novel Aryl Hydrocarbon Receptor Ligands and Their Role in Cell Migration

Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes

Cold/menthol TRPM8 receptors initiate the cold-shock response and protect germ cells from cold-shock-induced oxidation

Combined RNA/tissue profiling identifies novel Cancer/testis genes

Combining RNA and protein profiling data with network interactions identifies genes associated with spermatogenesis in mouse and human

Correction: Systemic Compensatory Response to Neonatal Estradiol Exposure Does Not Prevent Depletion of the Oocyte Pool in the Rat.

Cross-platform gene expression signature of human spermatogenic failure reveals inflammatory-like response.

Cytosine modifications modulate the chromatin architecture of transcriptional enhancers

DICER Regulates the Formation and Maintenance of Cell-Cell Junctions in the Mouse Seminiferous Epithelium.

Deciphering the Molecular Mechanisms Sustaining the Estrogenic Activity of the Two Major Dietary Compounds Zearalenone and Apigenin in ER-Positive Breast Cancer Cell Lines

Defining the human sperm microtubulome: an integrated genomics approach

Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton

Differential proteomic analysis of the mouse retina: the induction of crystallin proteins by retinal degeneration in the rd1 mouse

Distinct Transcriptional Profiles of the Female, Male, and Finasteride-Induced Feminized Male Anogenital Region in Rat Fetuses

Dynamics of the transcriptional landscape during human fetal testis and ovary development

Endogenous IL-33 Deficiency Exacerbates Liver Injury and Increases Hepatic Influx of Neutrophils in Acute Murine Viral Hepatitis

Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes

Evaluation of apoptotic- and autophagic-related protein expressions before and after IVM of fresh, slow-frozen and vitrified pre-pubertal mouse testicular tissue

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6

Exploiting advances in transcriptomics to improve on human-relevant toxicology

Expression of HLA-G by mast cells is associated with hepatitis C virus-induced liver fibrosis

Expression profiling and comparative genomics identify a conserved regulatory region controlling midline expression in the zebrafish embryo

Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis.

Expression screening of cancer/testis genes in prostate cancer identifies NR6A1 as a novel marker of disease progression and aggressiveness

Fhl5/Act, a CREM-binding transcriptional activator required for normal sperm maturation and morphology, is not essential for testicular gene expression

Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells

GOAnno: GO annotation based on multiple alignment

GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development

Genome-Wide Transcriptional and Functional Analysis of Human T Lymphocytes Treated with Benzo[]pyrene ⬇️

Genome‐wide identification of Sox8‐, and Sox9‐dependent genes during early post‐natal testis development in the mouse ⬇️

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle

Global human tissue profiling and protein network analysis reveals distinct levels of transcriptional germline-specificity and identifies target genes for male infertility.

Glyceollins trigger anti-proliferative effects through estradiol-dependent and independent pathways in breast cancer cells

High-Resolution Profiling of Novel Transcribed Regions During Rat Spermatogenesis1

Identification and characterization of rod-derived cone viability factor

Identification of genes associated with tumorigenesis and metastatic potential of hypopharyngeal cancer by microarray analysis

Interplay between transcription regulators RUNX1 and FUBP1 activates an enhancer of the oncogene c-KIT and amplifies cell proliferation.

Linking transcriptomics and proteomics in spermatogenesis

Meiotic Genes Are Enriched in Regions of Reduced Archaic Ancestry.

New transcriptomic tools to understand testis development and functions

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows

PipeAlign: A new toolkit for protein family analysis

Polyglutamine expansion causes neurodegeneration by altering the neuronal differentiation program

Profiling of androgen response in rainbow trout pubertal testis: relevance to male gonad development and spermatogenesis

Profiling spermatogenic failure in adult testes bearing Sox9-deficient Sertoli cells identifies genes involved in feminization, inflammation and stress.

PromAn: an integrated knowledge-based web server dedicated to promoter analysis

Proteomics and integrative genomics for unraveling the mysteries of spermatogenesis: the strategies of a team.

RUNX1 maintains the identity of the fetal ovary through an interplay with FOXL2

Research resource: the dynamic transcriptional profile of sertoli cells during the progression of spermatogenesis.

Rod-derived Cone Viability Factor-2 is a novel bifunctional-thioredoxin-like protein with therapeutic potential

Role of miR-34c microRNA in the late steps of spermatogenesis

Sperm proteins and cancer-testis antigens are released by the seminiferous tubules in mice and men

Systemic compensatory response to neonatal estradiol exposure does not prevent depletion of the oocyte pool in the rat.

TOXsIgN: a cross-species repository for toxicogenomic signatures.

Temporally regulated traffic of HuR and its associated ARE-containing mRNAs from the chromatoid body to polysomes during mouse spermatogenesis

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology

The Male Fertility Gene Atlas: a web tool for collecting and integrating OMICS data in the context of male infertility

The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

The conserved transcriptome in human and rodent male gametogenesis

The epigenetic processes of meiosis in male mice are broadly affected by the widely used herbicide atrazine.

Toward understanding the core meiotic transcriptome in mammals and its implications for somatic cancer.

Transcriptome analysis of fetal rat testis following intrauterine exposure to the azole fungicides triticonazole and flusilazole reveals subtle changes despite adverse endocrine effects

Understanding the Underlying Molecular Mechanisms of Meiotic Arrest during In Vitro Spermatogenesis in Rat Prepubertal Testicular Tissue

goCluster integrates statistical analysis and functional interpretation of microarray expression data.