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List of works by Susan McCouch

A Coordinated Suite of Wild-Introgression Lines in <i>Indica</i> and <i>Japonica</i> Elite Backgrounds

scientific article published on 12 November 2020

A SWEET solution to rice blight

scientific article published on 01 November 2019

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress

scientific article (publication date: 29 May 2013)

A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice

scientific article published on 12 May 2020

A recommendation for naming transcription factor proteins in the grasses

article

A universal core genetic map for rice

scientific article

ALCHEMY: a reliable method for automated SNP genotype calling for small batch sizes and highly homozygous populations

scientific article

ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1 (ART1) contributes to natural variation in aluminum resistance in diverse genetic backgrounds of rice (O. sativa)

scientific article published on 16 October 2017

Addressing Research Bottlenecks to Crop Productivity

scientific article published on 21 April 2021

Agriculture: Feeding the future

scientific article

An imputation platform to enhance integration of rice genetic resources

scientific article published in Nature Communications

Association mapping and genetic dissection of drought-induced canopy temperature differences in rice

scientific article published on 01 February 2020

Bridging old and new: Diversity and evaluation of high iron-associated stress response of rice cultivated in W. Africa

scientific article published on 11 April 2020

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

scientific article

Can biochemical traits bridge the gap between genomics and plant performance? A study in rice under drought

scientific article published in 2022

Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.

scientific article

Corrigendum: Open access resources for genome-wide association mapping in rice.

scientific article published on 20 April 2016

Development and GBS-genotyping of introgression lines (ILs) using two wild species of rice, O. meridionalis and O. rufipogon, in a common recurrent parent, O. sativa cv. Curinga

scientific article

Development and Mapping of 2240 New SSR Markers for Rice (Oryza sativa L.) (Supplement)

article

Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.).

scientific article

Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice (Oryza spp.)

article

Development of a novel aluminum tolerance phenotyping platform used for comparisons of cereal aluminum tolerance and investigations into rice aluminum tolerance mechanisms

scientific article published on 10 June 2010

Development of genome-wide SNP assays for rice

scientific article published in 2010

Dissection of a QTL reveals an adaptive, interacting gene complex associated with transgressive variation for flowering time in rice

scientific article published on 01 December 2009

Dissection of the genetic architecture of rice resistance to the blast fungus Magnaporthe oryzae

scientific article published on 17 November 2015

Diversifying selection in plant breeding

scientific article

Erratum to: Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

scientific article published on 01 January 2016

Erratum to: Population dynamics among six major groups of the Oryza rufipogon species complex, wild relative of cultivated Asian rice

scientific article published on 26 April 2017

Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding

scientific article published in Science

Evolutionary history of GS3, a gene conferring grain length in rice

scientific article published on 08 June 2009

Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants

scientific article published on 18 December 2015

Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3

scientific article

Fine mapping of a yield-enhancing QTL cluster associated with transgressive variation in an Oryza sativa x O. rufipogon cross

scientific article published on 19 December 2007

Functional properties of an alternative, tissue-specific promoter for rice NADPH-dependent dihydroflavonol reductase

scientific article published on 25 August 2017

Genes from wild rice improve yield

scientific article published in Nature

Genetic Analysis of Water Use Efficiency in Rice (Oryza sativa L.) at the Leaf Level

Genetic Diversity of Isolated Populations of Indonesian Landraces of Rice (Oryza sativa L.) Collected in East Kalimantan on the Island of Borneo

scientific article published on 18 February 2009

Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping

scientific article

Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis

scientific article

Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers

scientific article

Genetic structure and diversity in Oryza sativa L

scientific article

Genome wide association studies for japonica rice resistance to blast in field and controlled conditions

scientific article published on 08 October 2020

Genome-Wide Association Study Using Historical Breeding Populations Discovers Genomic Regions Involved in High-Quality Rice

scientific article published on 01 November 2018

Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions

scientific article

Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters

scientific article published on 4 February 2016

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

scientific article

Genome-wide patterns of nucleotide polymorphism in domesticated rice

scientific article

Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome

scientific article

Genomic regions responsible for seminal and crown root lengths identified by 2D & 3D root system image analysis.

scientific article

Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication

scientific article

Genomics of gene banks: A case study in rice

scientific article

Global dissemination of a single mutation conferring white pericarp in rice

scientific article

Gramene QTL database: development, content and applications

scientific article published on 08 May 2009

Gramene database in 2010: updates and extensions

scientific article (publication date: 2011)

Gramene, a tool for grass genomics

scientific article

Gramene: a bird's eye view of cereal genomes

scientific article

Gramene: a growing plant comparative genomics resource

scientific article

Gramene: a resource for comparative grass genomics

scientific article published on January 2002

Gramene: development and integration of trait and gene ontologies for rice

scientific article published on January 2002

High-Resolution Inflorescence Phenotyping Using a Novel Image-Analysis Pipeline, PANorama

scientific article

High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform

article by Michael J. Thomson et al published 20 November 2011 in Molecular Breeding

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development

scientific article published on 03 September 2012

How can we use genomics to improve cereals with rice as a reference genome?

scientific article published in September 2005

Hybrid assembly with long and short reads improves discovery of gene family expansions

scientific article

Identification of QTLs associated with physiological nitrogen use efficiency in rice

scientific article published on 01 February 2007

Identification of Trait-Improving Quantitative Trait Loci Alleles From a Wild Rice Relative, Oryza rufipogon

scientific article published on 28 April 2021

Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.).

scientific article published on 7 January 2008

Integrating Molecular Markers and Environmental Covariates To Interpret Genotype by Environment Interaction in Rice ( L.) Grown in Subtropical Areas

scientific article published on 07 May 2019

LABA1, a Domestication Gene Associated with Long, Barbed Awns in Wild Rice

scientific article

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications.

scientific article published on 30 August 2017

Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: genetic variation associated with population structure and QTL mapping

scientific article published on 18 February 2009

Low Additive Genetic Variation in a Trait Under Selection in Domesticated Rice

scientific article published on 21 May 2020

Metabolomics and genomics combine to unravel the pathway for the presence of fragrance in rice.

scientific article

Mobilizing Crop Biodiversity

scientific article published on 21 August 2020

Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding

scientific article published on 06 May 2013

Multiple and independent origins of short seeded alleles of GS3 in rice

scientific article published on March 2013

Natural variation of rice strigolactone biosynthesis is associated with the deletion of two MAX1 orthologs

scientific article published on 24 January 2014

Natural variation underlies alterations in Nramp aluminum transporter (NRAT1) expression and function that play a key role in rice aluminum tolerance

scientific article

New insights into the history of rice domestication

scientific article published on 25 October 2007

Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype–phenotype relationships and its relevance to crop improvement ⬇️

scientific article published on March 8, 2013

Not just a grain of rice: the quest for quality.

scientific article published on 18 February 2009

Nuclear and chloroplast diversity and phenotypic distribution of rice (Oryza sativa L.) germplasm from the democratic people's republic of Korea (DPRK; North Korea).

scientific article

Open access resources for genome-wide association mapping in rice.

scientific article

PICARA, an analytical pipeline providing probabilistic inference about a priori candidates genes underlying genome-wide association QTL in plants ⬇️

scientific article

Phenotypic Variation and the Impact of Admixture in the Oryza rufipogon Species Complex (ORSC)

scientific article published on 13 June 2022

Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages

scientific article

Plant genetic resources for food and agriculture: opportunities and challenges emerging from the science and information technology revolution

scientific article

Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

scientific article published on 12 October 2016

Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.).

scientific article

QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice

scientific article published in August 2004

Redefining 'stress resistance genes', and why it matters

scientific article published on 04 October 2016

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

article

Resistance to Multiple Temperate and Tropical Stem and Sheath Diseases of Rice

article

Selection under domestication: evidence for a sweep in the rice waxy genomic region

scientific article

Simple sequence repeat diversity in diploid and tetraploid Coffea species

scientific article published in June 2004

Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia

scientific article published on 27 March 2020

Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL

scientific article

The Gramene Genetic Diversity Module: a resource for genotype-phenotype association analysis in grass species

scientific article published on 18 July 2019

The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations

scientific article

The Tyrosine Aminomutase TAM1 Is Required for β-Tyrosine Biosynthesis in Rice

scientific article published on 21 April 2015

The complex history of the domestication of rice

scientific article published on 6 July 2007

The extent of linkage disequilibrium in rice (Oryza sativa L.).

scientific article

The origin and evolution of fragrance in rice (Oryza sativa L.).

scientific article published on 17 August 2009

The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant

scientific article

The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation

scientific article

Three-dimensional root phenotyping with a novel imaging and software platform

scientific article

Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa

Transgressive Variation for Yield Components Measured throughout the Growth Cycle of Jefferson Rice ( ) × Introgression Lines

Validation of Yield Component Traits Identified by Genome-Wide Association Mapping in a tropical japonica × tropical japonica Rice Biparental Mapping Population

scientific article published on 01 March 2019

Validation of yield-enhancing quantitative trait loci from a low-yielding wild ancestor of rice

When more is better: how data sharing would accelerate genomic selection of crop plants

scientific article

Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica

scientific article

Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation

scientific article

Whole-plant growth stage ontology for angiosperms and its application in plant biology

scientific article

Why finishing the rice genome matters

scientific article

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