List of works - Mehmet Koyutürk

Accurate estimation of short read mapping quality for next-generation genome sequencing ⬇️

scientific article published on September 15, 2012

Algorithmic and analytical methods in network biology ⬇️

scientific article published on May 1, 2010

Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases

An optimization framework for unsupervised identification of rare copy number variation from SNP array data

scientific article

Assessing the collective disease association of multiple genomic loci

Comprehensive evaluation of composite gene features in cancer outcome prediction

scientific article

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization

scientific article

DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads

scientific article

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing

scientific article

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model

scientific article

Drug Response Prediction as a Link Prediction Problem

scientific article published on 09 January 2017

Functional annotation of regulatory pathways

scientific article

Functional characterization and topological modularity of molecular interaction networks

scientific article

Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases

scientific article

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.

scientific article

Generalized and Mechanistic PV Module Performance Prediction From Computer Vision and Machine Learning on Electroluminescence Images

Identifying stage-specific protein subnetworks for colorectal cancer

scientific article

MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring

scientific article published on 30 June 2015

Mining Electronic Health Records Data: Domestic Violence and Adverse Health Effects

scientific article

NETWORK MAP OF ADVERSE HEALTH EFFECTS AMONG VICTIMS OF INTIMATE PARTNER VIOLENCE.

scientific article published on January 2016

Network biology methods integrating biological data for translational science

scientific article

Network signatures of survival in glioblastoma multiforme

scientific article

Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer

scientific article

Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks

article

Phylogenetic analysis of modularity in protein interaction networks

scientific article

Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree.

scientific article published on 29 June 2016

PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases

scientific article

Prioritization of genomic locus pairs for testing epistasis

article published in 2014

Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks ⬇️

scientific article published on October 28, 2011

Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer.

scientific article published on 10 May 2016

What Do We Learn from Network-Based Analysis of Genome-Wide Association Data?

article published in 2014

Whole-exome sequencing enhances prognostic classification of myeloid malignancies

scientific article

List of works by Mehmet Koyutürk

Accurate estimation of short read mapping quality for next-generation genome sequencing ⬇️

Algorithmic and analytical methods in network biology ⬇️

Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases

An optimization framework for unsupervised identification of rare copy number variation from SNP array data

Assessing the collective disease association of multiple genomic loci

Comprehensive evaluation of composite gene features in cancer outcome prediction

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization

DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model

Drug Response Prediction as a Link Prediction Problem

Functional annotation of regulatory pathways

Functional characterization and topological modularity of molecular interaction networks

Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.

Generalized and Mechanistic PV Module Performance Prediction From Computer Vision and Machine Learning on Electroluminescence Images

Identifying stage-specific protein subnetworks for colorectal cancer

MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring

Mining Electronic Health Records Data: Domestic Violence and Adverse Health Effects

NETWORK MAP OF ADVERSE HEALTH EFFECTS AMONG VICTIMS OF INTIMATE PARTNER VIOLENCE.

Network biology methods integrating biological data for translational science

Network signatures of survival in glioblastoma multiforme

Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer

Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks

Phylogenetic analysis of modularity in protein interaction networks

Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree.

PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases

Prioritization of genomic locus pairs for testing epistasis

Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks ⬇️

Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer.

What Do We Learn from Network-Based Analysis of Genome-Wide Association Data?

Whole-exome sequencing enhances prognostic classification of myeloid malignancies