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List of works by Ira R Cooke

A Pathway Proteomic Profile of Ischemic Stroke Survivors Reveals Innate Immune Dysfunction in Association with Mild Symptoms of Depression - A Pilot Study

scientific article published on 14 June 2016

A combined proteomic and transcriptomic analysis of slime secreted by the southern bottletail squid, Sepiadarium austrinum (Cephalopoda).

scientific article

A novel ex vivo immunoproteomic approach characterising Fasciola hepatica tegumental antigens identified using immune antibody from resistant sheep.

scientific article published on 25 April 2017

A snail's pace: A preliminary analysis of the effects of stress and genetics on movement of Haliotis

article

AlignStat: a web-tool and R package for statistical comparison of alternative multiple sequence alignments

scientific article

An Accessible Proteogenomics Informatics Resource for Cancer Researchers

scientific article published on November 2017

Analyses of Corallimorpharian Transcriptomes Provide New Perspectives on the Evolution of Calcification in the Scleractinia (Corals)

scientific article

Application of dual tree complex wavelet transform in tandem mass spectrometry.

scientific article

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data

scientific article published in 2022

Characterization of a distinct population of circulating human non-adherent endothelial forming cells and their recruitment via intercellular adhesion molecule-3

scientific article (publication date: 2012)

Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti , on the Great Barrier Reef

scientific article published on 24 July 2024

Chromosomal inversions harbour excess mutational load in the coral, Acropora kenti, on the Great Barrier Reef

scientific article published on 21 February 2024

CoCCoA: Complex Chemistry in hot Cores with ALMA

scientific article published in October 2023

Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus

scientific article

Comparative Proteomic Analysis of Slime from the Striped Pyjama Squid, Sepioloidea lineolata, and the Southern Bottletail Squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae)

scientific article published on 25 January 2019

Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages

scientific article published on 02 November 2018

Comparative transcriptomic analyses of Chromera and Symbiodiniaceae

scientific article published on 25 May 2020

Coupled Genomic Evolutionary Histories as Signatures of Organismal Innovations in Cephalopods: Co-evolutionary Signatures Across Levels of Genome Organization May Shed Light on Functional Linkage and Origin of Cephalopod Novelties

scientific article published on 30 October 2019

Coupling between lipid shape and membrane curvature.

scientific article published on July 2006

Cryptic diversity and spatial genetic variation in the coral and its endosymbionts across the Great Barrier Reef

scientific article published in February 2023

De novo characterisation of the greenlip abalone transcriptome (Haliotis laevigata) with a focus on the heat shock protein 70 (HSP70) family.

scientific article published on 31 July 2014

Discovery and Longitudinal Evaluation of Candidate Biomarkers for Ischaemic Stroke by Mass Spectrometry-Based Proteomics.

scientific article published on 20 December 2017

Epipodial Tentacle Gene Expression and Predetermined Resilience to Summer Mortality in the Commercially Important Greenlip Abalone, Haliotis laevigata

scientific article

Erratum: Publisher Correction: genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

scientific article published on 23 August 2018

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

scientific article published on 30 June 2017

Genomic evidence for West Antarctic Ice Sheet collapse during the Last Interglacial

scientific article published on 21 December 2023

Genomic signatures in the coral holobiont reveal host adaptations driven by Holocene climate change and reef specific symbionts

scientific article published on 27 November 2020

Liver proteome response of pre-harvest Atlantic salmon following exposure to elevated temperature

scientific article published on 12 February 2018

Molecular techniques and their limitations shape our view of the holobiont

scientific article published on 16 July 2019

Morphological stasis masks ecologically divergent coral species on tropical reefs

scientific article published on 02 April 2021

Multi-omic data analysis using Galaxy.

scientific article

Preliminary Validation of a High Docosahexaenoic Acid (DHA) and -Linolenic Acid (ALA) Dietary Oil Blend: Tissue Fatty Acid Composition and Liver Proteome Response in Atlantic Salmon (Salmo salar) Smolts.

scientific article

Proteogenomic analysis of the Venturia pirina (Pear Scab Fungus) secretome reveals potential effectors.

scientific article published on 09 July 2014

Shotgun Proteomics Analysis of Saliva and Salivary Gland Tissue from the Common Octopus Octopus vulgaris

scientific article published on 27 September 2018

Solvent-free model for self-assembling fluid bilayer membranes: stabilization of the fluid phase based on broad attractive tail potentials

scientific article published on 01 December 2005

Spatially varying selection between habitats drives physiological shifts and local adaptation in a broadcast spawning coral on a remote atoll in Western Australia

scientific article published on 27 April 2022

Symbiodinium genomes reveal adaptive evolution of functions related to coral-dinoflagellate symbiosis

article published in 2018

Symbiodiniumgenomes reveal adaptive evolution of functions related to symbiosis

The Whole-Genome Sequence of the Coral Acropora millepora

scientific article published on 01 May 2019

The complete mitochondrial genome of Haliotis laevigata (Gastropoda: Haliotidae) using MiSeq and HiSeq sequencing

scientific article published on 24 March 2014

The complete mitochondrial genome of the pygmy squid, Idiosepius (Cephalopoda: Decapodiformes): the first representative from the family Idiosepiidae

scientific article published on 17 January 2014

The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena)

scientific article published on 24 October 2018

Triploid Atlantic salmon shows similar performance, fatty acid composition and proteome response to diploids during early freshwater rearing

scientific article published on 11 February 2017

Tunable generic model for fluid bilayer membranes

scientific article published on 26 July 2005

What can the mitochondrial genome reveal about higher-level phylogeny of the molluscan class Cephalopoda?

scientific article (publication date: 12 January 2011)

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