List of works - Davide Risso

<i>NewWave</i>: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data

scientific article published in 2022

A comparison on effects of normalisations in the detection of differentially expressed genes

scientific article

A general and flexible method for signal extraction from single-cell RNA-seq data.

scientific article published on 18 January 2018

A-MADMAN: annotation-based microarray data meta-analysis tool

scientific article published on 29 June 2009

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data

scientific article published on 03 August 2020

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.

scientific article published on 21 July 2017

Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability

scientific article published on 01 May 2018

Comparison of computed tomography and magnetic resonance imaging in the discrimination of intraperitoneal and extraperitoneal rectal cancer: initial experience.

scientific article published on 21 October 2015

Complementary networks of cortical somatostatin interneurons enforce layer specific control

scientific article published on 18 March 2019

Contextual fear conditioning induces differential alternative splicing

scientific article published on 19 July 2016

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

scientific article

Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells

scientific article published on 12 January 2017

Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia

scientific article published on 15 May 2019

GC-content normalization for RNA-Seq data

scientific article

How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets

scientific article

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities

scientific article published on 17 November 2017

Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism

scientific article published on 16 January 2018

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

scientific article published on 24 July 2020

Normalization of RNA-seq data using factor analysis of control genes or samples

scientific article

Normalizing single-cell RNA sequencing data: challenges and opportunities

scientific article

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

scientific article published on 26 February 2018

Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

scientific article published in Nature Communications

Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

scientific article

Shank3 modulates sleep and expression of circadian transcription factors

scientific article published on 11 April 2019

Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron.

scientific article

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.

scientific article published on 19 June 2018

Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.

scientific article

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

article

mbkmeans: Fast clustering for single cell data using mini-batch k-means

scientific article published on 26 January 2021

List of works by Davide Risso

<i>NewWave</i>: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data

A comparison on effects of normalisations in the detection of differentially expressed genes

A general and flexible method for signal extraction from single-cell RNA-seq data.

A-MADMAN: annotation-based microarray data meta-analysis tool

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference.

Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability

Comparison of computed tomography and magnetic resonance imaging in the discrimination of intraperitoneal and extraperitoneal rectal cancer: initial experience.

Complementary networks of cortical somatostatin interneurons enforce layer specific control

Contextual fear conditioning induces differential alternative splicing

Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution

Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells

Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia

GC-content normalization for RNA-Seq data

How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets

Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities

Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

Normalization of RNA-seq data using factor analysis of control genes or samples

Normalizing single-cell RNA sequencing data: challenges and opportunities

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

Shank3 modulates sleep and expression of circadian transcription factors

Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron.

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.

Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in individual and meta-analysis studies.

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

mbkmeans: Fast clustering for single cell data using mini-batch k-means