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List of works by Jennifer E Phillips-Cremins

3DeFDR: statistical methods for identifying cell type-specific looping interactions in 5C and Hi-C data

scientific article published on 28 August 2020

5C-ID: Increased resolution Chromosome-Conformation-Capture-Carbon-Copy with in situ 3C and double alternating primer design

scientific article published on 24 May 2018

A subset of topologically associating domains fold into mesoscale core-periphery networks

scientific article published on 02 July 2019

Addressing cell-sourcing limitations with gene therapy.

scientific article published in September 2003

Alteration of genome folding via contact domain boundary insertion

scientific article published on 31 August 2020

Architectural protein subclasses shape 3D organization of genomes during lineage commitment

scientific article

CRISPR/Cas9 genome editing throws descriptive 3-D genome folding studies for a loop

scientific article published on 6 June 2016

Characterization of a small animal growth plate injury model using microcomputed tomography.

scientific article published on 20 February 2010

Chromatin structure dynamics during the mitosis-to-G1 phase transition

scientific article published on 27 November 2019

Cohesin-dependence of neuronal gene expression relates to chromatin loop length

scientific article published on 26 April 2022

Crossed wires: 3D genome misfolding in human disease.

scientific article published on 30 August 2017

Detecting hierarchical genome folding with network modularity

scientific article published on 15 January 2018

Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries

scientific article published on 30 August 2018

Dynamic Looping Interactions: Setting the 3D Stage for the Macrophage.

scientific article

Engineering graded tissue interfaces.

scholarly article

Genetic engineering for skeletal regenerative medicine.

scientific article published on January 2007

Glucocorticoid-induced osteogenesis is negatively regulated by Runx2/Cbfa1 serine phosphorylation.

scientific article published in February 2006

HiFive: a tool suite for easy and efficient HiC and 5C data analysis

scientific article

HiFive: a tool suite for easy and efficient HiC and 5C data analysis

scholarly article published 3 October 2014

Human mesenchymal stem cell differentiation on self-assembled monolayers presenting different surface chemistries.

scientific article published on 24 July 2009

Intraabdominal adhesion formation after preperitoneal dissection in the murine model

scientific article published on 01 January 1999

LADL: light-activated dynamic looping for endogenous gene expression control

scientific article published on 24 June 2019

Neuronal Yin Yang1 in the prefrontal cortex regulates transcriptional and behavioral responses to chronic stress in mice

scientific article published on 10 January 2022

On the existence and functionality of topologically associating domains

scientific article published on 10 January 2020

Promoter-anchored chromatin interactions predicted from genetic analysis of epigenomic data

scientific article published on 28 April 2020

Publisher Correction: Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression

scientific article published on 23 July 2020

Systematic Evaluation of Statistical Methods for Identifying Looping Interactions in 5C Data

scientific article published on 20 March 2019

The BET Protein BRD2 Cooperates with CTCF to Enforce Transcriptional and Architectural Boundaries

scientific article published in April 2017

The importance of the whole: Topological data analysis for the network neuroscientist

scientific article published on 01 July 2019

Three-dimensional genome restructuring across timescales of activity-induced neuronal gene expression

scientific article published on 25 May 2020

Unraveling architecture of the pluripotent genome.

scientific article published on 02 June 2014

Virus-based gene therapy strategies for bone regeneration.

scientific article published on 22 August 2006

YY1 and CTCF orchestrate a 3D chromatin looping switch during early neural lineage commitment

scientific article

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