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List of works by Mary K Kuhner

A Consensus Method for Ancestral Recombination Graphs

scientific article

Abstract 101: The mechanism of clonal expansion determines the tempo and mode of neoplastic progression in Barrett's esophagus

Assessing Differences Between Ancestral Recombination Graphs

scientific article published on 5 April 2015

Assessment of Esophageal Adenocarcinoma Risk Using Somatic Chromosome Alterations in Longitudinal Samples in Barrett's Esophagus

scientific article

Bayesian inference of local trees along chromosomes by the sequential Markov coalescent

scientific article

Bulk Genotyping of Biopsies Can Create Spurious Evidence for Hetereogeneity in Mutation Content

scientific article

CNValidator: validating somatic copy-number inference

scientific article published on 01 August 2019

Coalescent genealogy samplers: windows into population history

scientific article

Comparing likelihood and Bayesian coalescent estimation of population parameters

scientific article published on March 2006

Correcting Coalescent Analyses for Panel-Based SNP Ascertainment ⬇️

scientific article published on January 18, 2013

Correcting for sequencing error in maximum likelihood phylogeny inference

scientific article

Correction to: NSAID use and somatic exomic mutations in Barrett's esophagus

scholarly article published in Genome Medicine

Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs

scientific article published on 01 October 2020

Evolution of Barrett's esophagus through space and time at single-crypt and whole-biopsy levels.

scientific article published on 23 February 2018

Gene flow in the face of countervailing selection: adaptation to high-altitude hypoxia in the betaA hemoglobin subunit of yellow-billed pintails in the Andes

article

GraphML specializations to codify ancestral recombinant graphs

scientific article published on 07 August 2013

Joint inference of identity by descent along multiple chromosomes from population samples

scientific article published on March 2014

Likelihoods on coalescents: a Monte Carlo sampling approach to inferring parameters from population samples of molecular data

article by Joseph Felsenstein et al published 1999 in Lecture notes-monograph series / Institute of Mathematical Statistics

Limitations of the Driver/Passenger Model in Cancer Prevention

scientific article

NSAID use and somatic exomic mutations in Barrett's esophagus.

scientific article published on 27 February 2018

NSAIDs modulate clonal evolution in Barrett's esophagus.

scientific article

Population Genetics of HIV: Parameter Estimation Using Genealogy-based Methods

article

Practical performance of tree comparison metrics

scientific article

Robustness of coalescent estimators to between-lineage mutation rate variation

scientific article published on 6 September 2006

Signatures of high-altitude adaptation in the major hemoglobin of five species of andean dabbling ducks

scientific article

Temporal and spatial evolution of somatic chromosomal alterations: a case-cohort study of Barrett's esophagus

scientific article

The limits of fine-scale mapping

scientific article published on May 2009

Threefold Model

role-playing game model

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