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List of works by Timothy E. Reddy

Agent-based modeling of the context dependency in T cell recognition

scientific article published on 01 October 2005

Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation.

scientific article

Architecture of the human regulatory network derived from ENCODE data

scientific article (publication date: 6 September 2012)

Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites

scientific article

Causal network inference from gene transcriptional time-series response to glucocorticoids

scientific article published in 2021

Distinct properties of cell-type-specific and shared transcription factor binding sites

scientific article published on 26 September 2013

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers.

scientific article

Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia

scientific article published in Nature Communications

Genome-wide quantification of the effects of DNA methylation on human gene regulation

article

Glucocorticoid receptor triggers a reversible drug-tolerant dormancy state with acquired therapeutic vulnerabilities in lung cancer

scientific article published on 16 July 2021

Human genome-wide measurement of drug-responsive regulatory activity

scientific article published in Nature Communications

Multiplex CRISPR/Cas9-based genome editing for correction of dystrophin mutations that cause Duchenne muscular dystrophy.

scientific article

RNA-guided gene activation by CRISPR-Cas9-based transcription factors

scientific article

Targeted transcriptional modulation with type I CRISPR-Cas systems in human cells

scientific article published on 23 September 2019

Transcriptome and regulatory maps of decidua-derived stromal cells inform gene discovery in preterm birth

scientific article published on 02 December 2020

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