List of works - Marc F. Lensink

A Novel Integrated Way for Deciphering the Glycan Code for the FimH Lectin

scientific article published on 28 October 2018

A conserved arginine plays a role in the catalytic cycle of the protein disulphide isomerases.

scientific article

Assembly of B4GALT1/ST6GAL1 heteromers in the Golgi membranes involves lateral interactions via highly charged surface domains

scientific article published on 08 August 2019

Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures

scientific article

Balance between Coiled-Coil Stability and Dynamics Regulates Activity of BvgS Sensor Kinase in Bordetella

scientific article published on March 2016

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

scientific article published on 25 October 2019

Blind prediction of interfacial water positions in CAPRI

scientific article

Blind predictions of protein interfaces by docking calculations in CAPRI ⬇️

scientific article published on November 15, 2010

CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes

scientific article published in March 2024

CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.

scientific article

Cationic lipids activate cellular cascades. Which receptors are involved?

scientific article published on 06 March 2009

Coiled-Coil Antagonism Regulates Activity of Venus Flytrap-Domain-Containing Sensor Kinases of the BvgS Family

scientific article published on 27 February 2018

Comparing protein structures with RINspector automation in Cytoscape.

scientific article published on 9 May 2018

Computational characterization of the binding mode between oncoprotein Ets-1 and DNA-repair enzymes

scientific article published on 25 September 2018

Cover Image, Volume 88, Issue 8

Docking and scoring protein complexes: CAPRI 3rd Edition

scientific article

Docking and scoring protein interactions: CAPRI 2009 ⬇️

scientific article published on November 15, 2010

Docking, scoring, and affinity prediction in CAPRI.

scientific article published on 17 October 2013

FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility

scientific article published on 21 December 2016

Fusogenic activity of cationic lipids and lipid shape distribution.

scientific article

Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.

scientific article

LigASite--a database of biologically relevant binding sites in proteins with known apo-structures

scientific article published on 11 October 2007

Membrane-Associated Proteins and Peptides

scientific article published on 01 January 2008

Membrane-associated proteins and peptides.

scientific article published in January 2015

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition

scientific article published on 16 November 2016

Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition

scientific article published on 30 December 2019

Oligoarginine vectors for intracellular delivery: Role of arginine side-chain orientation in chain length-dependent destabilization of lipid membranes

scientific article published on 19 November 2011

On the molecular basis of D-bifunctional protein deficiency type III.

scientific article

Penetratin-membrane association: W48/R52/W56 shield the peptide from the aqueous phase.

scientific article published on 12 November 2004

Phosphorylation by protein kinase CK2 modulates the activity of the ATP binding cassette A1 transporter

scientific article published on 24 June 2004

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

Probing the conformation of FhaC with small-angle neutron scattering and molecular modeling.

scientific article

Regulatory motifs on ISWI chromatin remodelers: molecular mechanisms and kinetic proofreading

scientific article published on 07 January 2015

Relating destabilizing regions to known functional sites in proteins

scientific article

Response of SCP-2L domain of human MFE-2 to ligand removal: binding site closure and burial of peroxisomal targeting signal.

scientific article published in October 2002

Score_set: a CAPRI benchmark for scoring protein complexes

scientific article published on 11 September 2014

Signal Transduction by BvgS Sensor Kinase: BINDING OF MODULATOR NICOTINATE AFFECTS THE CONFORMATION AND DYNAMICS OF THE ENTIRE PERIPLASMIC MOIETY.

scientific article published on 22 July 2015

Signal transduction by BvgS sensor kinase. Binding of modulator nicotinate affects the conformation and dynamics of the entire periplasmic moiety

scientific article published in October 2015

Signal transduction in the photoactive yellow protein. I. Photon absorption and the isomerization of the chromophore

scientific article

Signal transduction in the photoactive yellow protein. II. Proton transfer initiates conformational changes

scientific article

Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator.

scientific article published in August 1996

Spotlight on Human LL-37, an Immunomodulatory Peptide with Promising Cell-Penetrating Properties.

scientific article

TRPM8-Rap1A Interaction Sites as Critical Determinants for Adhesion and Migration of Prostate and Other Epithelial Cancer Cells

scientific article published on 30 April 2022

Targeting Dynamical Binding Processes in the Design of Non-Antibiotic Anti-Adhesives by Molecular Simulation-The Example of FimH

scientific article published on 05 July 2018

The Antiadhesive Strategy in Crohn's Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut

scientific article

The challenge of modeling protein assemblies: The CASP12-CAPRI experiment.

scientific article published on 10 November 2017

The structure of the CD3ζζ transmembrane dimer in lipid bilayers

scientific article published on 09 December 2013

Unexpected wide substrate specificity of C. perfringens α-toxin phospholipase C

scientific article published on 24 June 2011

Virulence regulation with Venus flytrap domains: structure and function of the periplasmic moiety of the sensor-kinase BvgS

scientific article

List of works by Marc F. Lensink

A Novel Integrated Way for Deciphering the Glycan Code for the FimH Lectin

A conserved arginine plays a role in the catalytic cycle of the protein disulphide isomerases.

Assembly of B4GALT1/ST6GAL1 heteromers in the Golgi membranes involves lateral interactions via highly charged surface domains

Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures

Balance between Coiled-Coil Stability and Dynamics Regulates Activity of BvgS Sensor Kinase in Bordetella

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

Blind prediction of interfacial water positions in CAPRI

Blind predictions of protein interfaces by docking calculations in CAPRI ⬇️

CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes

CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.

Cationic lipids activate cellular cascades. Which receptors are involved?

Coiled-Coil Antagonism Regulates Activity of Venus Flytrap-Domain-Containing Sensor Kinases of the BvgS Family

Comparing protein structures with RINspector automation in Cytoscape.

Computational characterization of the binding mode between oncoprotein Ets-1 and DNA-repair enzymes

Cover Image, Volume 88, Issue 8

Docking and scoring protein complexes: CAPRI 3rd Edition

Docking and scoring protein interactions: CAPRI 2009 ⬇️

Docking, scoring, and affinity prediction in CAPRI.

FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility

Fusogenic activity of cationic lipids and lipid shape distribution.

Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.

LigASite--a database of biologically relevant binding sites in proteins with known apo-structures

Membrane-Associated Proteins and Peptides

Membrane-associated proteins and peptides.

Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition

Modeling protein-protein, protein-peptide, and protein-oligosaccharide complexes: CAPRI 7th edition

Oligoarginine vectors for intracellular delivery: Role of arginine side-chain orientation in chain length-dependent destabilization of lipid membranes

On the molecular basis of D-bifunctional protein deficiency type III.

Penetratin-membrane association: W48/R52/W56 shield the peptide from the aqueous phase.

Phosphorylation by protein kinase CK2 modulates the activity of the ATP binding cassette A1 transporter

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Probing the conformation of FhaC with small-angle neutron scattering and molecular modeling.

Regulatory motifs on ISWI chromatin remodelers: molecular mechanisms and kinetic proofreading

Relating destabilizing regions to known functional sites in proteins

Response of SCP-2L domain of human MFE-2 to ligand removal: binding site closure and burial of peroxisomal targeting signal.

Score_set: a CAPRI benchmark for scoring protein complexes

Signal Transduction by BvgS Sensor Kinase: BINDING OF MODULATOR NICOTINATE AFFECTS THE CONFORMATION AND DYNAMICS OF THE ENTIRE PERIPLASMIC MOIETY.

Signal transduction by BvgS sensor kinase. Binding of modulator nicotinate affects the conformation and dynamics of the entire periplasmic moiety

Signal transduction in the photoactive yellow protein. I. Photon absorption and the isomerization of the chromophore

Signal transduction in the photoactive yellow protein. II. Proton transfer initiates conformational changes

Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator.

Spotlight on Human LL-37, an Immunomodulatory Peptide with Promising Cell-Penetrating Properties.

TRPM8-Rap1A Interaction Sites as Critical Determinants for Adhesion and Migration of Prostate and Other Epithelial Cancer Cells

Targeting Dynamical Binding Processes in the Design of Non-Antibiotic Anti-Adhesives by Molecular Simulation-The Example of FimH

The Antiadhesive Strategy in Crohn's Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut

The challenge of modeling protein assemblies: The CASP12-CAPRI experiment.

The structure of the CD3ζζ transmembrane dimer in lipid bilayers

Unexpected wide substrate specificity of C. perfringens α-toxin phospholipase C

Virulence regulation with Venus flytrap domains: structure and function of the periplasmic moiety of the sensor-kinase BvgS