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List of works by Johan Lindberg

A Novel Technique for Biobanking of Large Sections of Radical Prostatectomy Specimens.

scientific article published on 7 September 2017

A comparison of methods for alignment of NMR peaks in the context of cluster analysis

scientific article published on 2 April 2005

A prostate cancer susceptibility allele at 6q22 increases RFX6 expression by modulating HOXB13 chromatin binding.

scientific article

A quantitative LC/MS method targeting urinary 1-methyl-4-imidazoleacetic acid for safety monitoring of the global histamine turnover in clinical studies

scientific article published on 16 January 2014

A solution to the 1D NMR alignment problem using an extended generalized fuzzy Hough transform and mode support

scientific article published on 22 July 2009

A systems biology approach to understanding elevated serum alanine transaminase levels in a clinical trial with ximelagatran

scientific article published in December 2009

Analysis of time-related metabolic fluctuations induced by ethionine in the rat.

scientific article published on 30 October 2007

Androgen Receptor Burden and Poor Response to Abiraterone or Enzalutamide in TP53 Wild-Type Metastatic Castration-Resistant Prostate Cancer

scientific article published on 01 July 2019

Antibodies to several citrullinated antigens are enriched in the joints of rheumatoid arthritis patients

scientific article published in January 2010

Are Prostate Specific-Antigen (PSA) and age associated with the risk of ISUP Grade 1 prostate cancer? Results from 72 996 individual biopsy cores in 6 083 men from the Stockholm3 study.

scientific article published on 13 June 2019

Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study

scientific article published on 08 January 2020

Automated annotation and quantification of metabolites in 1H NMR data of biological origin

scientific article

Automation of cDNA synthesis and labelling improves reproducibility

scientific article

Bioinformatory-assisted analysis of next-generation sequencing data for precision medicine in pancreatic cancer

scientific article

Cell-free DNA profiling of metastatic prostate cancer reveals microsatellite instability, structural rearrangements and clonal hematopoiesis

scientific article published on 21 November 2018

Clonal hematopoiesis and blood-cancer risk inferred from blood DNA sequence

scientific article

Comprehensive Profiling of the Androgen Receptor in Liquid Biopsies from Castration-resistant Prostate Cancer Reveals Novel Intra-AR Structural Variation and Splice Variant Expression Patterns

scientific article published on 16 January 2017

Correlation network analysis for data integration and biomarker selection

scientific article

Corrigendum to "Integration of Copy Number and Transcriptomics Provides Risk Stratification in Prostate Cancer: A Discovery and Validation Cohort Study" [EBioMedicine 2 (9) (2015) 1133-1144].

scientific article published on 8 March 2017

Determination of binding specificities in highly multiplexed bead-based assays for antibody proteomics

scientific article published on 23 October 2006

Determining breast cancer histological grade from RNA-sequencing data

scientific article

Development and Validation of a Novel RNA Sequencing-Based Prognostic Score for Acute Myeloid Leukemia

scientific article published in March 2018

Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits

scientific article

Differential impact of RB status on E2F1 reprogramming in human cancer

scientific article

Effect of infliximab on mRNA expression profiles in synovial tissue of rheumatoid arthritis patients

scientific article published on January 2006

Elevated levels of circulating CDH5 and FABP1 in association with human drug-induced liver injury

scientific article

Evaluation of exome sequencing to estimate tumor burden in plasma

scientific article

Exome sequencing of contralateral breast cancer identifies metastatic disease

scientific article

Exome sequencing of prostate cancer supports the hypothesis of independent tumour origins

scientific article published on 31 March 2012

Expression levels of long non-coding RNAs are prognostic for AML outcome.

scientific article

Extremely different behaviours in high and low body weight lines of chicken are associated with differential expression of genes involved in neuronal plasticity

scientific article published on 15 January 2009

Feature detection and alignment of hyphenated chromatographic-mass spectrometric data. Extraction of pure ion chromatograms using Kalman tracking

scientific article

Gene regulatory mechanisms underpinning prostate cancer susceptibility

scientific article published on 07 March 2016

Genetic Profile of Ductal Adenocarcinoma of the Prostate

scientific article published on 27 April 2017

Genetic markers associated with early cancer-specific mortality following prostatectomy

scientific article

Has the PROPHECY of AR-V7 Been Fulfilled?

scientific article published on 02 July 2019

Hypermethylation of the GABRE~miR-452~miR-224 promoter in prostate cancer predicts biochemical recurrence after radical prostatectomy

scientific article published on April 2014

Identification of new differentially methylated genes that have potential functional consequences in prostate cancer

scientific article

Identification of novel CHD1-associated collaborative alterations of genomic structure and functional assessment of CHD1 in prostate cancer

scientific article published on 5 December 2011

Immunohistochemical profile of ductal adenocarcinoma of the prostate

scientific article published on 25 July 2014

In Situ Mass Spectrometry Imaging and Ex Vivo Characterization of Renal Crystalline Deposits Induced in Multiple Preclinical Drug Toxicology Studies ⬇️

scientific article published on October 23, 2012

Integration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort study

scientific article

Intra-tumor heterogeneity in breast cancer has limited impact on transcriptomic-based molecular profiling.

scientific article published on 29 November 2017

Investigation of rare variation in one thousand cancer genes and its association with risk of breast and prostate cancer

article

Large-scale evaluation of SLC18A2 in prostate cancer reveals diagnostic and prognostic biomarker potential at three molecular levels

scientific article published on 9 February 2016

Library preparation and multiplex capture for massive parallel sequencing applications made efficient and easy

scientific article

Molecular Differences between Screen-Detected and Interval Breast Cancers Are Largely Explained by PAM50 Subtypes

scientific article published on September 2016

Multiple antibody reactivities to citrullinated antigens in sera from patients with rheumatoid arthritis: association with HLA-DRB1 alleles

scientific article published on 17 July 2008

Predictive metabolite profiling applying hierarchical multivariate curve resolution to GC-MS data--a potential tool for multi-parametric diagnosis

scientific article

Proof of principle of a generalized fuzzy Hough transform approach to peak alignment of one-dimensional 1H NMR data

scientific article

Prostate cancer screening in men aged 50 to 69 years (STHLM3): A prospective population-based diagnostic study. Grönberg H, Adolfsson J, Aly M, Nordström T, Wiklund P, Brandberg Y, Thompson J, Wiklund F, Lindberg J, Clements M, Egevad L, Eklund M.La

scientific article published in March 2017

Prostate cancer screening in men aged 50–69 years (STHLM3): a prospective population-based diagnostic study

scientific article (publication date: December 2015)

Second-order peak detection for multicomponent high-resolution LC/MS data

scientific article

Sequencing of breast cancer stem cell populations indicates a dynamic conversion between differentiation states in vivo

scientific article

Sequencing-based breast cancer diagnostics as an alternative to routine biomarkers

scientific article

Signal pathways JNK and NF-kappaB, identified by global gene expression profiling, are involved in regulation of TNFalpha-induced mPGES-1 and COX-2 expression in gingival fibroblasts

scientific article

Signaling pathways involved in the regulation of TNFα-induced toll-like receptor 2 expression in human gingival fibroblasts.

scientific article

Somatic alterations detected in diagnostic prostate biopsies provide an inadequate representation of multifocal prostate cancer

scientific article published on 25 March 2019

Systemic TNF blockade does not modulate synovial expression of the pro-inflammatory mediator HMGB1 in rheumatoid arthritis patients--a prospective clinical study

scientific article published on 17 March 2008

TP53 Outperforms Other Androgen Receptor Biomarkers to Predict Abiraterone or Enzalutamide Outcome in Metastatic Castration-Resistant Prostate Cancer

scientific article published on 12 September 2018

The In Vitro Stability of Circulating Tumour DNA.

scientific article

The RNA-binding protein Sam68 regulates expression and transcription function of the androgen receptor splice variant AR-V7

scientific article

The Stockholm-3 (STHLM3) Model can Improve Prostate Cancer Diagnostics in Men Aged 50-69 yr Compared with Current Prostate Cancer Testing

scientific article

The gene expression profile in the synovium as a predictor of the clinical response to infliximab treatment in rheumatoid arthritis

scientific article (publication date: 25 June 2010)

The mitochondrial and autosomal mutation landscapes of prostate cancer

scientific article published on 5 December 2012

The plasticity of the mammalian transcriptome

scientific article published on 28 August 2009

Time-resolved biomarker discovery in 1H-NMR data using generalized fuzzy Hough transform alignment and parallel factor analysis

scientific article

Towards Next-generation Urine-based Prostate Cancer Risk Stratification

scientific article published on 28 September 2018

Tracking the origin of metastatic prostate cancer

scientific article published on 22 September 2014

Translating a Prognostic DNA Genomic Classifier into the Clinic: Retrospective Validation in 563 Localized Prostate Tumors

scientific article

Transmission of stress-induced learning impairment and associated brain gene expression from parents to offspring in chickens

scientific article

Validation of risk stratification models in acute myeloid leukemia using sequencing-based molecular profiling.

scientific article published on 7 February 2017

Variability in synovial inflammation in rheumatoid arthritis investigated by microarray technology

scientific article

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