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List of works by John Clark Lagarias

1H, 13C, and 15N chemical shift assignments of cyanobacteriochrome NpR6012g4 in the green-absorbing photoproduct state.

scientific article

4-amino-5-hexynoic Acid-a potent inhibitor of tetrapyrrole biosynthesis in plants.

scientific article published in November 1988

A Constitutively Active Allele of Phytochrome B Maintains Circadian Robustness in the Absence of Light.

scientific article published on 8 July 2015

A Tightly Regulated Genetic Selection System with Signaling-Active Alleles of Phytochrome B

scientific article

A conserved histidine-aspartate pair is required for exovinyl reduction of biliverdin by a cyanobacterial phycocyanobilin:ferredoxin oxidoreductase.

scientific article published on 2 December 2005

A cyanobacterial phytochrome two-component light sensory system.

scientific article published in September 1997

A far-red cyanobacteriochrome lineage specific for verdins

scientific article published on 26 October 2020

A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1.

scientific article

A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus.

scientific article

Affinity labeling of Avena phytochrome with ATP analogs.

scientific article

Algal light sensing and photoacclimation in aquatic environments.

scientific article published on 28 February 2017

Bile pigment-protein interactions. Coupled oxidation of cytochrome c ⬇️

scientific article published on 01 November 1982

Bilin-dependent photoacclimation in Chlamydomonas reinhardtii

scientific article published on 30 October 2017

Biliverdin amides reveal roles for propionate side chains in bilin reductase recognition and in holophytochrome assembly and photoconversion.

scientific article

Calcium Transport in the Green Alga Mesotaenium caldariorum: Preliminary Characterization and Subcellular Distribution.

scientific article

Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Hydrophobic Pocket for the C15-E,anti Chromophore in the Photoproduct.

scientific article published on 5 June 2015

Characterization of Red/Green Cyanobacteriochrome NpR6012g4 by Solution Nuclear Magnetic Resonance Spectroscopy: A Protonated Bilin Ring System in Both Photostates.

scientific article published on 14 April 2015

Chemical inhomogeneity in the ultrafast dynamics of the DXCF cyanobacteriochrome Tlr0924.

scientific article published on 11 July 2012

Climate change and the integrity of science

scientific article

Complementation of phytochrome chromophore-deficient Arabidopsis by expression of phycocyanobilin:ferredoxin oxidoreductase.

scholarly article

Conservation and Diversity in the Primary Reverse Photodynamics of the Canonical Red/Green Cyanobacteriochrome Family

scientific article published on 06 October 2020

Conservation and diversity in the primary forward photodynamics of red/green cyanobacteriochromes.

scientific article

Conservation and diversity in the secondary forward photodynamics of red/green cyanobacteriochromes

scientific article published on 01 October 2019

Conserved phenylalanine residues are required for blue-shifting of cyanobacteriochrome photoproducts.

scientific article published on 6 May 2014

Correlating structural and photochemical heterogeneity in cyanobacteriochrome NpR6012g4.

scientific article published on 9 April 2018

Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies.

scientific article published on 4 May 2017

Diverse two-cysteine photocycles in phytochromes and cyanobacteriochromes ⬇️

scientific article published on June 28, 2011

Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome Cph1.

scientific article published on 21 April 2014

Eukaryotic algal phytochromes span the visible spectrum

scientific article published on 24 February 2014

Evolution-inspired design of multicolored photoswitches from a single cyanobacteriochrome scaffold

scientific article published on 22 June 2020

Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light.

scientific article published on 21 August 2014

Femtosecond Photodynamics of the Red/Green Cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 1. Forward Dynamics ⬇️

scientific article published on January 6, 2012

Femtosecond photodynamics of the red/green cyanobacteriochrome NpR6012g4 from Nostoc punctiforme. 2. reverse dynamics.

scientific article

Forward Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme

scientific article published on 22 April 2019

Genetic engineering of phytochrome biosynthesis in bacteria.

scientific article

Green/red cyanobacteriochromes regulate complementary chromatic acclimation via a protochromic photocycle ⬇️

scientific article published on March 11, 2013

His74 conservation in the bilin reductase PcyA family reflects an important role in protein-substrate structure and dynamics ⬇️

scientific article published on August 2, 2013

Identification of Cyanobacteriochromes Detecting Far-Red Light.

scientific article published on 13 June 2016

Identification of DXCF cyanobacteriochrome lineages with predictable photocycles

scientific article

Insight into the radical mechanism of phycocyanobilin-ferredoxin oxidoreductase (PcyA) revealed by X-ray crystallography and biochemical measurements

scientific article

LOF and GOF Alleles Shed Light on the Molecular Basis of phyB Signaling in Plants

scientific article published on 13 May 2019

Light-Regulated Synthesis of Cyclic-di-GMP by a Bidomain Construct of the Cyanobacteriochrome Tlr0924 (SesA) without Stable Dimerization.

scientific article published on 26 October 2017

Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants.

scientific article

Marine algae and land plants share conserved phytochrome signaling systems.

scientific article

Mechanistic insight into the photosensory versatility of DXCF cyanobacteriochromes.

scientific article published on 18 April 2012

Near-UV cyanobacteriochrome signaling system elicits negative phototaxis in the cyanobacterium Synechocystis sp. PCC 6803

scientific article

Noncanonical Photodynamics of the Orange/Green Cyanobacteriochrome Power Sensor NpF2164g7 from the PtxD Phototaxis Regulator of Nostoc punctiforme

scientific article published on 23 April 2018

NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning.

scientific article

Optically Guided Photoactivity: Coordinating Tautomerization, Photoisomerization, Inhomogeneity, and Reactive Intermediates within the RcaE Cyanobacteriochrome

scientific article published on 14 April 2014

Photoactivatable genetically encoded calcium indicators for targeted neuronal imaging

scientific article

Photoconversion changes bilin chromophore conjugation and protein secondary structure in the violet/orange cyanobacteriochrome NpF2164g3' [corrected].

scientific article published on June 2014

Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus

scientific article published on 14 December 2018

Phycocyanobilin is the natural precursor of the phytochrome chromophore in the green alga Mesotaenium caldariorum

scientific article (publication date: 10 October 1997)

Phycocyanobilin:ferredoxin oxidoreductase of Anabaena sp. PCC 7120. Biochemical and spectroscopic.

scientific article

Phycoviolobilin formation and spectral tuning in the DXCF cyanobacteriochrome subfamily.

scientific article published on 8 February 2012

Phytochrome B inhibits binding of phytochrome-interacting factors to their target promoters

scientific article

Phytochrome C plays a major role in the acceleration of wheat flowering under long-day photoperiod

scientific article

Phytochrome Chromophore Biosynthesis : Both 5-Aminolevulinic Acid and Biliverdin Overcome Inhibition by Gabaculine in Etiolated Avena sativa L. Seedlings.

scientific article

Phytochrome ancestry: sensors of bilins and light.

scientific article

Phytochrome evolution in 3D: deletion, duplication, and diversification

scientific article published on 02 November 2019

Phytochrome structure and signaling mechanisms.

scientific article

Primary and secondary photodynamics of the violet/orange dual-cysteine NpF2164g3 cyanobacteriochrome domain from Nostoc punctiforme

scientific article published on 3 February 2014

Primary photodynamics of the green/red-absorbing photoswitching regulator of the chromatic adaptation E domain from Fremyella diplosiphon

scientific article

Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues.

scientific article published on March 2000

Properties of a polycation-stimulated protein kinase associated with purified Avena phytochrome.

scientific article published in October 1989

Protonation Heterogeneity Modulates the Ultrafast Photocycle Initiation Dynamics of Phytochrome Cph1

scientific article published on 11 June 2018

Purification and characterization of recombinant affinity peptide-tagged oat phytochrome A.

scientific article

Reverse Photodynamics of the Noncanonical Red/Green NpR3784 Cyanobacteriochrome from Nostoc punctiforme

scientific article published on 29 April 2019

Second-chance forward isomerization dynamics of the red/green cyanobacteriochrome NpR6012g4 from Nostoc punctiforme.

scientific article published on 15 December 2011

Single-molecule dynamics of phytochrome-bound fluorophores probed by fluorescence correlation spectroscopy.

scholarly article

Spectral and photochemical diversity of tandem cysteine cyanobacterial phytochromes

scientific article published on 17 March 2020

Structure of the biliverdin radical intermediate in phycocyanobilin:ferredoxin oxidoreductase identified by high-field EPR and DFT.

scientific article published on February 2009

The phycocyanobilin chromophore of streptophyte algal phytochromes is synthesized by HY2.

scientific article published on 20 January 2017

The phytofluors: a new class of fluorescent protein probes.

scientific article

The structure of phytochrome: a picture is worth a thousand spectra.

scientific article

Two-photon excitation of a phytofluor protein

scientific article published on 15 February 2002

Ultrafast E to Z photoisomerization dynamics of the Cph1 phytochrome.

scientific article published on 31 August 2012

Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis

scientific article published on 9 January 2013

Unraveling the Primary Isomerization Dynamics in Cyanobacterial Phytochrome Cph1 with Multi-pulse Manipulations.

scientific article published on July 2013

Visualization of bilin-linked peptides and proteins in polyacrylamide gels.

scientific article published in July 1986

¹H, ¹⁵N, and ¹³C chemical shift assignments of cyanobacteriochrome NpF2164g3 in the photoproduct state.

scientific article published on 9 June 2013

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