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List of works by Alexandre V Morozov

A Biophysical Approach to Predicting Protein-DNA Binding Energetics

scientific article

A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress

scientific article

A universal scaling law determines time reversibility and steady state of substitutions under selection.

scientific article published on August 2012

Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction.

scientific article

Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters

scientific article

Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae

scientific article published on 03 June 2009

Connecting protein structure with predictions of regulatory sites.

scientific article

Correlated electrostatic mutations provide a reservoir of stability in HIV protease

scientific article

Decoding complex chemical mixtures with a physical model of a sensor array

scientific article

Electron density redistribution accounts for half the cooperativity of alpha helix formation

scientific article published in March 2006

Functional roles of nucleosome stability and dynamics

scientific article

Gene regulation by nucleosome positioning ⬇️

scientific article published on 09 September 2010

Generalization of the Ewens sampling formula to arbitrary fitness landscapes.

scientific article

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster

scientific article published on October 2015

Genomic studies and computational predictions of nucleosome positions and formation energies.

scientific article published on January 2010

Global remodeling of nucleosome positions in C. elegans

scientific article

High-throughput sequencing reveals a simple model of nucleosome energetics

scientific article

Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses.

scientific article published on 24 April 2013

Pairwise and higher-order correlations among drug-resistance mutations in HIV-1 subtype B protease

scientific article published on 27 August 2009

Path statistics, memory, and coarse-graining of continuous-time random walks on networks ⬇️

scientific article published in December 2015

Path-based approach to random walks on networks characterizes how proteins evolve new functions.

scientific article published on 22 August 2013

Protein folding and binding can emerge as evolutionary spandrels through structural coupling. ⬇️

scientific article

Protein-DNA binding specificity predictions with structural models

scientific article

Scaling properties of evolutionary paths in a biophysical model of protein adaptation ⬇️

scientific article published on 28 May 2015

Single temperature for Monte Carlo optimization on complex landscapes.

scientific article published on 20 June 2012

Statistical Mechanics of Nucleosomes Constrained by Higher-Order Chromatin Structure ⬇️

scientific article published on July 1, 2011

Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.

scientific article

Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions

scientific article published on 13 May 2011

Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer.

scientific article

Ubiquitous nucleosome crowding in the yeast genome.

scientific article published on 24 March 2014

Using DNA mechanics to predict in vitro nucleosome positions and formation energies.

scientific article published on 09 June 2009

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