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List of works by Yunfeng Yang

A latitudinal gradient of microbial β‐diversity in continental paddy soils

scientific article published in 2021

A novel ammonia-oxidizing archaeon from wastewater treatment plant: Its enrichment, physiological and genomic characteristics

scientific article published on 31 March 2016

A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

scientific article published on 18 September 2020

Abundance of kinless hubs within soil microbial networks are associated with high functional potential in agricultural ecosystems

scientific article published on 25 June 2020

Ageratina adenophora invasions are associated with microbially mediated differences in biogeochemical cycles

scientific article published on 23 April 2019

Alpine soil carbon is vulnerable to rapid microbial decomposition under climate cooling.

scientific article

An integrated study to analyze soil microbial community structure and metabolic potential in two forest types

scientific article (publication date: 2014)

Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession

scientific article published on 6 May 2015

Antimony efflux underpins phosphorus cycling and resistance of phosphate-solubilizing bacteria in mining soils

scientific article published in 2023

Application of random matrix theory to microarray data for discovering functional gene modules

scientific article

Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference

scientific article

Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants

scientific article published on 01 December 2019

Bacterial responses to environmental change on the Tibetan Plateau over the past half century

scientific article

Bacteriophage-prokaryote dynamics and interaction within anaerobic digestion processes across time and space

scientific article

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

scientific article published on 14 October 2019

Bamboo invasion of broadleaf forests altered soil fungal community closely linked to changes in soil organic C chemical composition and mineral N production

scientific article published in 2017

Biochar reduces soil heterotrophic respiration in a subtropical plantation through increasing soil organic carbon recalcitrancy and decreasing carbon-degrading microbial activity

scholarly article published in July 2018

Biodegradability of wastewater determines microbial assembly mechanisms in full-scale wastewater treatment plants

scientific article published on 06 November 2019

Biogeography and Assembly of Microbial Communities in Wastewater Treatment Plants in China

scientific article published on 07 April 2020

Bradymonabacteria, a novel bacterial predator group with versatile survival strategies in saline environments

scientific article published on 31 August 2020

Cellular response of Shewanella oneidensis to strontium stress

scientific article published in January 2006

Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response

scientific article

Climate warming accelerates temporal scaling of grassland soil microbial biodiversity

scientific article published on 25 March 2019

Climate warming enhances microbial network complexity and stability

scientific article published in 2021

Climate warming leads to divergent succession of grassland microbial communities

scholarly article

Climate warming restructures seasonal dynamics of grassland soil microbial communities

scientific article published in 2022

Co-existing water and sediment bacteria are driven by contrasting environmental factors across glacier-fed aquatic systems

scientific article published in 2021

Combined genomics and experimental analyses of respiratory characteristics of Shewanella putrefaciens W3-18-1

scientific article published on 28 June 2013

Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations

scientific article published on 4 January 2012

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory

scientific article

Contrasting soil microbial community functional structures in two major landscapes of the Tibetan alpine meadow

scientific article

Conversion of marginal land into switchgrass conditionally accrues soil carbon and reduces methane consumption

scientific article

Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption

scientific article

Correspondence: Reply to 'Analytical flaws in a continental-scale forest soil microbial diversity study'

scientific article

Corrigendum: Effects of Short-Term Warming and Altered Precipitation on Soil Microbial Communities in Alpine Grassland of the Tibetan Plateau

scientific article published on 18 April 2017

Crude oil as a microbial seed bank with unexpected functional potentials

scientific article

Dissimilar responses of fungal and bacterial communities to soil transplantation simulating abrupt climate changes

scientific article published on 01 April 2019

Distance-Decay Relationship for Biological Wastewater Treatment Plants

scientific article

Divergent taxonomic and functional responses of microbial communities to field simulation of aeolian soil erosion and deposition.

scientific article

Diversity and assembly patterns of activated sludge microbial communities: A review

scientific article

Diversity and interactions of microbial functional genes under differing environmental conditions: insights from a membrane bioreactor and an oxidation ditch

scientific article published on 8 January 2016

Ecological Barrier Deterioration Driven by Human Activities Poses Fatal Threats to Public Health due to Emerging Infectious Diseases

scientific article published in 2022

Effects of Short-Term Warming and Altered Precipitation on Soil Microbial Communities in Alpine Grassland of the Tibetan Plateau

scientific article

Effects of residual organics in municipal wastewater on hydrogenotrophic denitrifying microbial communities

scientific article published on 10 March 2017

Embracing mountain microbiome and ecosystem functions under global change

scientific article published on 25 February 2022

Emerging Patterns of Microbial Functional Traits

scientific article published in 2021

Environmental antibiotics drives the genetic functions of resistome dynamics

scientific article published on 17 December 2019

Fecal microbiota reveal adaptation of herbivores to the extreme environment of the Qinghai–Tibet Plateau

scientific article published in 2024

Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning

scientific article published on 26 October 2019

Functional profiles of soil microbial communities in the alpine and temperate grasslands of China

scientific article published in 2022

Functional structures of soil microbial community relate to contrasting N2O emission patterns from a highly acidified forest

scientific article published on 06 April 2020

Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming

scientific article published on 29 September 2020

Genomic dynamics of full-scale temperature-phased anaerobic digestion treating waste activated sludge: Focusing on temperature differentiation

scientific article published on 04 March 2019

Geo-distribution pattern of microbial carbon cycling genes responsive to petroleum contamination in continental horizontal oilfields

scientific article published on 05 May 2020

GeoChip as a metagenomics tool to analyze the microbial gene diversity along an elevation gradient

scientific article

GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping.

scientific article

GeoChip-based analysis of microbial community of a combined nitritation-anammox reactor treating anaerobic digestion supernatant

scientific article

Geochip-based analysis of microbial communities in alpine meadow soils in the Qinghai-Tibetan plateau

scientific article

Global diversity and biogeography of bacterial communities in wastewater treatment plants

scientific article published on 13 May 2019

High variations of methanogenic microorganisms drive full-scale anaerobic digestion process

scientific article published on 07 March 2019

High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats

scientific article

Impacts of Shewanella oneidensis c-type cytochromes on aerobic and anaerobic respiration

scientific article published on July 2010

Improvement of cellulose catabolism in Clostridium cellulolyticum by sporulation abolishment and carbon alleviation.

scientific article published on 20 February 2014

Integrated metagenomics and network analysis of soil microbial community of the forest timberline.

scientific article

Land scale biogeography of arsenic biotransformation genes in estuarine wetland.

scientific article published on 26 April 2017

Linkages between microbial functional potential and wastewater constituents in large-scale membrane bioreactors for municipal wastewater treatment

scientific article published on 15 March 2014

Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils

article

Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials

scientific article published on 28 October 2018

Long-term nitrogen addition modifies microbial composition and functions for slow carbon cycling and increased sequestration in tropical forest soil

scientific article published on 01 August 2019

Long-term soil transplant simulating climate change with latitude significantly alters microbial temporal turnover

scientific article

Long-term successional dynamics of microbial association networks in anaerobic digestion processes

scientific article

Long‐term elevated precipitation induces grassland soil carbon loss via microbe‐plant–soil interplay

scientific article published in 2023

Metabolic Engineering of Clostridium cellulolyticum for Production of Isobutanol from Cellulose

scientific article published in 2012

Metabolic engineering of Clostridium cellulolyticum for production of isobutanol from cellulose

scientific article

Methanogenic community dynamics in anaerobic co-digestion of fruit and vegetable waste and food waste

scientific article

Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment

scientific article published on 19 September 2017

Microbial Functional Gene Diversity Predicts Groundwater Contamination and Ecosystem Functioning.

scientific article published on 20 February 2018

Microbial Functional Responses Explain Alpine Soil Carbon Fluxes under Future Climate Scenarios

scientific article published in 2021

Microbial community functional structures in wastewater treatment plants as characterized by GeoChip

scientific article

Microbial functional diversity covaries with permafrost thaw-induced environmental heterogeneity in tundra soil

scientific article

Microbial functional diversity: From concepts to applications

scientific article published on 02 October 2019

Microbial functional gene patterns related to soil greenhouse gas emissions in oil contaminated areas

scientific article published on 8 February 2018

Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters

scientific article published on 25 August 2017

Microbial functional traits are sensitive indicators of mild disturbance by lamb grazing

scientific article published on 30 January 2019

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

scientific article

Microbial mediation of soil carbon loss at the potential climax of alpine grassland under warming

scientific article published in 2024

Microbial responses to inorganic nutrient amendment overridden by warming: Consequences on soil carbon stability

article

Microbial responses to southward and northward Cambisol soil transplant

scientific article published on 26 October 2015

Molecular ecological network analyses.

scientific article

Molecular mechanisms of water table lowering and nitrogen deposition in affecting greenhouse gas emissions from a Tibetan alpine wetland

scientific article

More sensitive microbial responses to the interactive effects of warming and altered precipitation in subsoil than topsoil of an alpine grassland ecosystem

scientific article published in 2024

Multiple antibiotic resistance genes distribution in ten large-scale membrane bioreactors for municipal wastewater treatment

scientific article published on 30 September 2016

Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation

scientific article published on 14 July 2015

Nitrogen addition and warming rapidly alter microbial community compositions in the mangrove sediment

scientific article published in December 2022

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

scientific article published on 10 January 2022

Over 150 years of long-term fertilization alters spatial scaling of microbial biodiversity

scientific article published on 7 April 2015

Overall functional gene diversity of microbial communities in three full-scale activated sludge bioreactors

scientific article

Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2

scientific article (publication date: 2011)

Planting increases the abundance and structure complexity of soil core functional genes relevant to carbon and nitrogen cycling

scientific article published on 23 September 2015

Precipitation balances deterministic and stochastic processes of bacterial community assembly in grassland soils

scientific article published on 29 March 2022

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance

scientific article published on 07 January 2020

Random sampling process leads to overestimation of β-diversity of microbial communities

scientific article

Reduction of microbial diversity in grassland soil is driven by long-term climate warming

scientific article published in 2022

Reproducibility and quantitation of amplicon sequencing-based detection

scientific article

Responses of Bacterial Communities to Simulated Climate Changes in Alpine Meadow Soil of the Qinghai-Tibet Plateau.

scientific article

Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland

scientific article published on 27 November 2012

Roles of UndA and MtrC of Shewanella putrefaciens W3-18-1 in iron reduction

scientific article

SARS-CoV-2 spillover into hospital outdoor environments

scientific article published on 18 May 2020

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production

scientific article

Shifts in soil microbial community functional gene structure across a 61-year desert revegetation chronosequence

scientific article

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity

scientific article published on 06 April 2020

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

scientific article

Soil enzymes as indicators of soil function: A step toward greater realism in microbial ecological modeling

scientific article published on 14 December 2021

Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests.

scientific article published on 12 September 2015

Species Divergence vs. Functional Convergence Characterizes Crude Oil Microbial Community Assembly

scientific article published on 12 August 2016

Stimulation of soil respiration by elevated CO<sub>2</sub> is enhanced under nitrogen limitation in a decade-long grassland study

scientific article published on 14 December 2020

Stochastic assembly leads to alternative communities with distinct functions in a bioreactor microbial community

scientific article

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

scientific article

Temperature mediates continental-scale diversity of microbes in forest soils.

scientific article

Temporal changes in global soil respiration since 1987

scientific article published on 15 January 2021

The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture

scientific article

The Composition and Spatial Patterns of Bacterial Virulence Factors and Antibiotic Resistance Genes in 19 Wastewater Treatment Plants

scientific article

The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry

scientific article

The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands

scientific article published on 17 February 2015

The microbial gene diversity along an elevation gradient of the Tibetan grassland.

scientific article

The microbial network property as a bio-indicator of antibiotic transmission in the environment

scientific article published on 14 November 2020

The scale dependence of fungal community distribution in paddy soil driven by stochastic and deterministic processes

scientific article published on 30 August 2019

The shifts of sediment microbial community phylogenetic and functional structures during chromium (VI) reduction

scientific article published on 16 September 2016

The spatial scale dependence of diazotrophic and bacterial community assembly in paddy soil

scientific article published in 2019

The tricarboxylic acid cycle in Shewanella oneidensis is independent of Fur and RyhB control

scientific article

Trade-offs and cost-benefit of ecosystem services of revegetated degraded alpine meadows over time on the Qinghai-Tibetan Plateau

scholarly article

Variations of Soil Microbial Community Structures Beneath Broadleaved Forest Trees in Temperate and Subtropical Climate Zones

scientific article published on 10 February 2017

Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community

scientific article published on 17 January 2020

Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria

scientific article published on 05 June 2020

Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: potential consequences on carbon stability

scientific article published on 10 December 2020

Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization

scientific article published on 12 July 2016

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