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List of works by Pierre Thibault

A Novel Differential Ion Mobility Device Expands the Depth of Proteome Coverage and the Sensitivity of Multiplex Proteomic Measurements

scientific article published on 14 July 2018

A Roadmap Toward the Definition of Actionable Tumor-Specific Antigens ⬇️

journal article from 'Frontiers in Immunology' published in 2020

A cell-signaling network temporally resolves specific versus promiscuous phosphorylation

scientific article

A comprehensive characterization of membrane vesicles released by autophagic human endothelial cells

scientific article published in April 2013

A host YB-1 ribonucleoprotein complex is hijacked by hepatitis C virus for the control of NS3-dependent particle production

scientific article

A novel proteomics approach to identify SUMOylated proteins and their modification sites in human cells ⬇️

scientific article published on November 22, 2010

Accurate Quantitative Proteomic Analyses Using Metabolic Labeling and High Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS)

scientific article published on 17 April 2019

Activation loop phosphorylation of ERK3/ERK4 by group I p21-activated kinases (PAKs) defines a novel PAK-ERK3/4-MAPK-activated protein kinase 5 signaling pathway

scientific article

An enhanced mass spectrometry approach reveals human embryonic stem cell growth factors in culture

scientific article published on 20 October 2008

Analysis of bacterial glycolipids by capillary electrophoresis-electrospray mass spectrometry: Haemophilus influenzae and Neisseria meningitidis lipopolysaccharides

scientific article published on 01 January 2003

Analysis of the biogenesis of heparan sulfate acetyl-CoA:alpha-glucosaminide N-acetyltransferase provides insights into the mechanism underlying its complete deficiency in mucopolysaccharidosis IIIC

scientific article

Application of microfluidic devices to proteomics research: identification of trace-level protein digests and affinity capture of target peptides

scientific article published in February 2002

Artifactual sulfation of silver-stained proteins: implications for the assignment of phosphorylation and sulfation sites

scientific article published on 20 October 2008

Biochemical properties of glycosylation and characterization of a histidine acid phosphatase (phytase) expressed in Pichia pastoris

scientific article published on 27 March 2014

Blood extracellular vesicles from healthy individuals regulate hematopoietic stem cells as humans age

scientific article published on 07 October 2020

CD4 is active as a signaling molecule on the human monocytic cell line Thp-1.

scientific article published on September 2002

CDC28 phosphorylates Cac1p and regulates the association of chromatin assembly factor I with chromatin.

scientific article published in January 2015

CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization.

scientific article published on 5 June 2017

Caterpillar- and salivary-specific modification of plant proteins.

scientific article published on 21 September 2010

Cell cycle regulation of Greatwall kinase nuclear localization facilitates mitotic progression ⬇️

scientific article published on July 15, 2013

Changes in flagellin glycosylation affect Campylobacter autoagglutination and virulence

scientific article

Chaperone-mediated acetylation of histones by Rtt109 identified by quantitative proteomics ⬇️

scientific article published on October 2, 2012

Characterisation of the intact rainbow trout vitellogenin protein and analysis of its derived tryptic and cyanogen bromide peptides by matrix-assisted laser desorption/ionisation time-of-flight-mass spectrometry and electrospray ionisation quadrupol ⬇️

scientific article published on January 1, 2003

Characterization and de novo sequencing of Atlantic salmon vitellogenin protein by electrospray tandem and matrix-assisted laser desorption/ionization mass spectrometry

scientific article published in January 2004

Combined Enrichment/Enzymatic Approach To Study Tightly Clustered Multisite Phosphorylation on Ser-Rich Domains

scientific article published on 09 August 2018

Combined enzymatic and data mining approaches for comprehensive phosphoproteome analyses: application to cell signaling events of interferon-gamma-stimulated macrophages

scientific article

Comparison of the MHC I Immunopeptidome Repertoire of B-Cell Lymphoblasts Using Two Isolation Methods

scientific article published on 6 March 2018

Comprehensive profiling of histone modifications using a label-free approach and its applications in determining structure-function relationships

scientific article published in August 2008

Correction to "Caterpillar- and Salivary-Specific Modification of Plant Proteins"

scientific article published on 13 April 2016

Corrigendum to "Introduction to the HUPO 2015 Special Issue" [J. Proteomics (2016) 1-2].

scientific article published in January 2017

Cross-talk between SUMOylation and ISGylation in response to interferon

scientific article published on 07 February 2020

Cyclin B3 activates the Anaphase-Promoting Complex/Cyclosome in meiosis and mitosis

scientific article published on 02 November 2020

Deletion of immunoproteasome subunits imprints on the transcriptome and has a broad impact on peptides presented by major histocompatibility complex I molecules.

scientific article

Derivatization of carbohydrates

scientific article published on 01 January 2003

Discovery of protein acetylation patterns by deconvolution of peptide isomer mass spectra

scientific article

Displacement of N/Q-rich Peptides on TiO2Beads Enhances the Depth and Coverage of Yeast Phosphoproteome Analyses ⬇️

scientific article published on May 8, 2013

Drosophila S2 cells secrete wingless on exosome-like vesicles but the wingless gradient forms independently of exosomes

scientific article

Dynamic Phosphoproteomics Uncovers Signaling Pathways Modulated by Anti-oncogenic Sphingolipid Analogs

scientific article published on 27 November 2018

ERAAP Shapes the Peptidome Associated with Classical and Nonclassical MHC Class I Molecules

scientific article published on July 2016

ERK1/2 phosphorylate Raptor to promote Ras-dependent activation of mTOR complex 1 (mTORC1).

scientific article published on 11 November 2010

ETO2 coordinates cellular proliferation and differentiation during erythropoiesis

scientific article

Efficient sample processing for proteomics applications--are we there yet?

scientific article

Elucidating novel hepatitis C virus-host interactions using combined mass spectrometry and functional genomics approaches

scientific journal article

Engineering the pattern of protein glycosylation modulates the thermostability of a GH11 xylanase.

scientific article published on 11 July 2013

Enhanced protein detection using a trapping mode on a hybrid quadrupole linear ion trap (Q-Trap).

scientific article published in August 2009

Enhanced sensitivity in proteomics experiments using FAIMS coupled with a hybrid linear ion trap/Orbitrap mass spectrometer.

scientific article published in July 2009

Essential role of BRG, the ATPase subunit of BAF chromatin remodeling complexes, in leukemia maintenance.

scientific article published on 29 January 2014

Extended Synaptotagmin 1 Interacts with Herpes Simplex Virus 1 Glycoprotein M and Negatively Modulates Virus-Induced Membrane Fusion

scientific article published on 18 October 2017

Extending the Comprehensiveness of Immunopeptidome Analyses Using Isobaric Peptide Labeling

scientific article published on 05 June 2020

Fungal Rtt109 histone acetyltransferase is an unexpected structural homolog of metazoan p300/CBP

scientific article

Gas-Phase Enrichment of Multiply Charged Peptide Ions by Differential Ion Mobility Extend the Comprehensiveness of SUMO Proteome Analyses.

scientific article published on 5 April 2018

Genetic Landscape of Electron Transport Chain Complex I Dependency in Acute Myeloid Leukemia

Global and Site-Specific Changes in 5-Methylcytosine and 5-Hydroxymethylcytosine after Extended Post-mortem Interval

scientific article

Global proteogenomic analysis of human MHC class I-associated peptides derived from non-canonical reading frames

scientific article published on 5 January 2016

Glycopeptide specificity of the secretory protein folding sensor UDP-glucose glycoprotein:glucosyltransferase.

scientific article

Glycoprotein analysis by capillary zone electrophoresis-electrospray mass spectrometry

scientific article published on 01 January 2003

H3 lysine 4 is acetylated at active gene promoters and is regulated by H3 lysine 4 methylation

scientific article

H3.3G34W promotes growth and impedes differentiation of osteoblast-like mesenchymal progenitors in Giant Cell Tumour of Bone

scientific article published on 23 September 2020

High-sensitivity nanoLC-MS/MS analysis of urinary desmosine and isodesmosine

scientific article published on March 2009

Histone Deacetylase Inhibitors Globally Enhance H3/H4 Tail Acetylation Without Affecting H3 Lysine 56 Acetylation ⬇️

scientific article published on January 12, 2012

Identification and preliminary characterization of a 75-kDa hemin- and hemoglobin-binding outer membrane protein of Actinobacillus pleuropneumoniae serotype 1 ⬇️

scientific article published on October 1, 2003

Identification of cross talk between SUMOylation and ubiquitylation using a sequential peptide immunopurification approach

scientific article

Identification of differentially expressed proteins in human glioblastoma cell lines and tumors

scientific article

Identification of glycan structure and glycosylation sites in cellobiohydrolase II and endoglucanases I and II from Trichoderma reesei

scientific article

Identification of unusual bacterial glycosylation by tandem mass spectrometry analyses of intact proteins

scientific article published in December 2005

Imipridone Anticancer Compounds Ectopically Activate the ClpP Protease and Represent a New Scaffold for Antibiotic Development

scientific article published on 24 February 2020

Immunogenic stress and death of cancer cells: Contribution of antigenicity vs adjuvanticity to immunosurveillance

scientific article published in November 2017

Immunopeptidomic analyses of colorectal cancers with and without microsatellite instability

scientific article published on 01 April 2022

Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides

scientific article published on 09 April 2014

Improvement of Phosphoproteome Analyses Using FAIMS and Decision Tree Fragmentation. Application to the Insulin Signaling Pathway in Drosophila melanogaster S2 Cells ⬇️

scientific article published on February 3, 2012

Improvement of Quantitative Measurements in Multiplex Proteomics Using High-Field Asymmetric Waveform Spectrometry

scientific article published on 10 October 2016

In vitro assay to determine SUMOylation sites on protein substrates

scientific article published on 28 January 2016

Insights into the insect salivary gland proteome: diet-associated changes in caterpillar labial salivary proteins.

scientific article

Integrated microfluidic device for mass spectrometry-based proteomics and its application to biomarker discovery programs

scientific article published in March 2005

Integrated system for rapid proteomics analyses using microfluidic devices coupled to nanoelectrospray mass spectrometry

scientific article

Interferon, restriction factors and SUMO pathways

scientific article published on 08 May 2020

Interplay between histone H3 lysine 56 deacetylation and chromatin modifiers in response to DNA damage.

scientific article published on 18 March 2015

Interplay of Ubiquitin-Like Modifiers Following Arsenic Trioxide Treatment

scientific article published on 08 April 2020

Introduction to the HUPO 2015 Special Issue

scientific article published on 01 October 2016

Involvement of Extracellular Vesicles in the Proinflammatory Response to Clozapine: Implications for Clozapine-Induced Agranulocytosis

scientific article published in 2024

Kinetic characterization and identification of the acylation and glycosylation sites of recombinant human gamma-glutamyltranspeptidase

scientific article

Large-scale analysis of lysine SUMOylation by SUMO remnant immunoaffinity profiling.

scientific article published on 13 November 2014

MAPDP: A Cloud-Based Computational Platform for Immunopeptidomics Analyses

scientific article published on 13 March 2020

MHC I-associated peptides preferentially derive from transcripts bearing miRNA response elements

scientific article

MHC class I-associated peptides derive from selective regions of the human genome

scientific article

MYST protein acetyltransferase activity requires active site lysine autoacetylation

scientific article

Machine Learning of Global Phosphoproteomic Profiles Enables Discrimination of Direct versus Indirect Kinase Substrates.

scientific article published on 6 March 2017

Modulation of histone H3 lysine 56 acetylation as an antifungal therapeutic strategy

scientific article

Modulation of the phagosome proteome by interferon-gamma.

scientific article published on 21 December 2007

Molecular characterization of the evolution of phagosomes

scientific article

Molecular dissection of the eukaryotic initiation factor 4E (eIF4E) export-competent RNP

scientific article

Monoubiquitination of ASXLs controls the deubiquitinase activity of the tumor suppressor BAP1

scientific article published in Nature Communications

Most non-canonical proteins uniquely populate the proteome or immunopeptidome

scientific article published on 10 March 2021

Mubritinib Targets the Electron Transport Chain Complex I and Reveals the Landscape of OXPHOS Dependency in Acute Myeloid Leukemia

scientific article published on 01 July 2019

Multi-Modal Scanning X-Ray Microscopy

N-Terminal ubiquitination of extracellular signal-regulated kinase 3 and p21 directs their degradation by the proteasome

scientific article

NanoLC-MS/MS analyses of urinary desmosine, hydroxylysylpyridinoline and lysylpyridinoline as biomarkers for chronic graft-versus-host disease

scientific article published in November 2009

Noncoding regions are the main source of targetable tumor-specific antigens

scientific article published on 01 December 2018

Numerical comparison of X-ray differential phase contrast and attenuation contrast

scientific article published on 27 April 2012

Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments

scientific article

Oligodendrocyte-myelin glycoprotein (OMgp) is an inhibitor of neurite outgrowth

scientific article

Oncogenic MAPK signaling stimulates mTORC1 activity by promoting RSK-mediated raptor phosphorylation

scientific article

Organ messenger ribonucleic acid and plasma proteome changes in the adjuvant-induced arthritis model: responses to disease induction and therapy with the estrogen receptor-beta selective agonist ERB-041

scientific article published on 03 November 2005

Organelle proteomics: looking at less to see more

scientific article published on December 2003

Organelle proteomics: looking at less to see more

scientific article published in January 2004

Origin and plasticity of MHC I-associated self peptides

scientific article

PTEN deficiency and AMPK activation promote nutrient scavenging and anabolism in prostate cancer cells

scientific article published on 23 March 2018

Phagosomes are competent organelles for antigen cross-presentation ⬇️

scientific article published on September 25, 2003

Phospho-dependent recruitment of the yeast NuA4 acetyltransferase complex by MRX at DNA breaks regulates RPA dynamics during resection

article published in the Proceedings of the National Academy of Sciences of the United States of America

Phosphoproteome dynamics of Saccharomyces cerevisiae under heat shock and cold stress

scientific article published on 3 June 2015

Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions

scientific article

Phosphoproteomic analysis identifies the tumor suppressor PDCD4 as a RSK substrate negatively regulated by 14-3-3.

scientific article

Phosphorylation network rewiring by gene duplication

scientific article published on 05 July 2011

Phosphorylation of IRF-3 on Ser 339 generates a hyperactive form of IRF-3 through regulation of dimerization and CBP association

scientific article published on 13 February 2008

Photolabeling of tissue transglutaminase reveals the binding mode of potent cinnamoyl inhibitors.

scientific article

Positive regulation of insulin signaling by neuraminidase 1.

scientific article published on 21 March 2013

Posttranslational regulation of self-renewal capacity: insights from proteome and phosphoproteome analyses of stem cell leukemia

scientific article published on 16 July 2012

Presence of diabetes autoantigens in extracellular vesicles derived from human islets

scientific article

Probing genetic variation and glycoform distribution in lectins of the Erythrina genus by mass spectrometry

scientific article published in June 2004

Process outgrowth in oligodendrocytes is mediated by CNP, a novel microtubule assembly myelin protein

scientific article published on August 2005

Promyelocytic Leukemia Protein (PML) Requirement for Interferon-induced Global Cellular SUMOylation

scientific article published on 13 March 2018

ProteoConnections: a bioinformatics platform to facilitate proteome and phosphoproteome analyses

scientific article published on 31 May 2011

Proteogenomics Uncovers a Vast Repertoire of Shared Tumor-Specific Antigens in Ovarian Cancer

scientific article published on 11 February 2020

Proteome Analysis and Functional Expression Identify Mortalin as an Antiapoptotic Gene Induced by Elevation of [Na + ] i /[K + ] i Ratio in Cultured Vascular Smooth Muscle Cells

article

Proteome dynamics in health and disease. Foreword

scientific article published on 01 April 2015

Proteomic characterization of phagosomal membrane microdomains during phagolysosome biogenesis and evolution

scientific article (publication date: November 2012)

Proteomic profiling of a mouse model for ovarian granulosa cell tumor identifies VCP as a highly sensitive serum tumor marker in several human cancers

scientific article

Proteomic-coupled-network analysis of T877A-androgen receptor interactomes can predict clinical prostate cancer outcomes between White (non-Hispanic) and African-American groups

scientific article

Proteomics Analysis of Herpes Simplex Virus Type 1-Infected Cells Reveals Dynamic Changes of Viral Protein Expression, Ubiquitylation, and Phosphorylation ⬇️

scientific article published on March 4, 2013

Proteomics of Herpes Simplex Virus Type 1 Nuclear Capsids

scientific article published on 25 November 2020

Proteomics: from protein structures to clinical applications

scientific article published in April 2013

Ptychographic Imaging in Materials and Life Sciences

Ptychography & lensless X-ray imaging

Quantitative SUMO proteomics identifies PIAS1 substrates involved in cell migration and motility

scientific article published on 11 February 2020

Quantitative SUMO proteomics reveals the modulation of several PML nuclear body associated proteins and an anti-senescence function of UBC9.

scientific article

Quantitative proteomics reveals that only a subset of the endoplasmic reticulum contributes to the phagosome.

scientific article

Quantitative proteomics reveals the induction of mitophagy in tumor necrosis factor-α-activated (TNFα) macrophages

scientific article published on 14 May 2013

Regulation of stress-inducible phosphoprotein 1 nuclear retention by protein inhibitor of activated STAT PIAS1.

scientific article

Regulation of the DNA damage response and gene expression by the Dot1L histone methyltransferase and the 53Bp1 tumour suppressor

scientific article

Regulation of the histone deacetylase Hst3 by cyclin-dependent kinases and the ubiquitin ligase SCFCdc4.

scientific article

Rejection of leukemic cells requires antigen-specific T cells with high functional avidity.

scientific article

Role of SUMOylation in full antiestrogenicity

scientific article

SUMO-Modification of the La Protein Facilitates Binding to mRNA In Vitro and in Cells

scientific article

Sample Collection Method Bias Effects in Quantitative Phosphoproteomics

scientific article published on 16 June 2015

Sample preparation and analytical strategies for large-scale phosphoproteomics experiments

scientific article published on 06 June 2012

Selective detection and identification of sugar nucleotides by CE-electrospray-MS and its application to bacterial metabolomics

scientific article published in February 2004

Simulations of multi-contrast x-ray imaging using near-field speckles

Simulations of x-ray speckle-based dark-field and phase-contrast imaging with a polychromatic beam

Structural heterogeneity of carbohydrate modifications affects serospecificity of Campylobacter flagellins

scientific article published in October 2002

Structural maintenance of chromosome (SMC) proteins link microtubule stability to genome integrity

scientific article

Structure of Extended Lipopolysaccharide Glycoforms Containing Two Globotriose Units in Haemophilus influenzae Serotype b Strain RM7004 ⬇️

scientific article published on April 22, 2003

Structure of the Rtt109-AcCoA/Vps75 Complex and Implications for Chaperone-Mediated Histone Acetylation ⬇️

scientific article published on January 20, 2011

Structures of carbohydrates found n animals and bacteria

scientific article published on 01 January 2003

Subcellular phosphoproteomics

scientific article

Synergistic action of co-expressed xylanase/laccase mixtures against milled sugar cane bagasse

article by Raquel Fonseca-Maldonado et al published July 2014 in Process Biochemistry

Targeted Identification of SUMOylation Sites in Human Proteins Using Affinity Enrichment and Paralog-specific Reporter Ions ⬇️

scientific article published on June 7, 2013

The 20S proteasome core, active within apoptotic exosome-like vesicles, induces autoantibody production and accelerates rejection.

scientific article published in December 2015

The MHC I immunopeptidome conveys to the cell surface an integrative view of cellular regulation.

scientific article

The MHC class I peptide repertoire is molded by the transcriptome.

scientific article published on 25 February 2008

The Origin and Immune Recognition of Tumor-Specific Antigens

scientific article published on 12 September 2020

The SysteMHC Atlas project

scientific article published on 29 July 2017

The coming of age of phosphoproteomics--from large data sets to inference of protein functions

scientific article

The exon junction complex controls the splicing of MAPK and other long intron-containing transcripts in Drosophila

scientific article published on October 2010

The imaging and coherence beamline I13L at DIAMOND (Conference Presentation)

scientific article published on 3 October 2017

The nature of self for T cells-a systems-level perspective

scientific article

The phagosomal proteome in interferon-gamma-activated macrophages

scientific article published in January 2009

Time-resolved Phosphoproteome Analysis of Paradoxical RAF Activation Reveals Novel Targets of ERK.

scientific article published on 10 February 2017

UBAP2L is a novel BMI1-interacting protein essential for hematopoietic stem cell activity

scientific article

UM171 Preserves Epigenetic Marks that Are Reduced in Ex Vivo Culture of Human HSCs via Potentiation of the CLR3-KBTBD4 Complex

scientific article published on 01 January 2021

Uncovering the SUMOylation and ubiquitylation crosstalk in human cells using sequential peptide immunopurification

scientific article

Undetectable histone O-GlcNAcylation in mammalian cells

scientific article

Unraveling Site-Specific and Combinatorial Histone Modifications Using High-Resolution Mass Spectrometry in Histone Deacetylase Mutants of Fission Yeast

scientific article published on 21 June 2016

Viscosin, a potent peptidolipid biosurfactant and phytopathogenic mediator produced by a pectolytic strain of Pseudomonas fluorescens

scientific article published on 10 March 2005

WITHDRAWN: Global and site-specific changes in 5-methylcytosine and 5-hydroxymethylcytosine after extended post-mortem interval

retracted scientific article published on 13 October 2016

Widespread and tissue-specific expression of endogenous retroelements in human somatic tissues

scientific article published on 28 April 2020

X-Ray Near-Field Ptychography for Optically Thick Specimens

aPKC-mediated phosphorylation regulates asymmetric membrane localization of the cell fate determinant Numb

scientific article

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