List of works - Brian Jimenez

A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data

scientific article

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

scientific article published on 25 October 2019

Blind prediction of interfacial water positions in CAPRI

scientific article

CCharPPI web server: computational characterization of protein-protein interactions from structure

scientific article published on 02 September 2014

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

scientific article

Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges

scientific article published on 17 October 2013

IRaPPA: information retrieval based integration of biophysical models for protein assembly selection

scientific article published on 14 February 2017

Integrative modeling of membrane-associated protein assemblies

scientific article published on 04 December 2020

Integrative modeling of protein-protein interactions with pyDock for the new docking challenges

scientific article published on 19 November 2019

LightDock goes information-driven

scientific article published on 01 February 2020

LightDock: a new multi-scale approach to protein-protein docking.

scientific article published on 4 September 2017

Modeling Antibody-Antigen Complexes by Information-Driven Docking

scientific article published on 11 November 2019

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes

scientific article published on 01 November 2019

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

scientific article

SKEMPI 2.0: An updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation

SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation

scientific article published on 01 February 2019

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

scientific article

pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions

scientific article published on 4 October 2016

pyDockEneRes: per-residue decomposition of protein-protein docking energy

scientific article published on 01 April 2020

pyDockSAXS: protein-protein complex structure by SAXS and computational docking

scientific article published on 20 April 2015

pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring ⬇️

scientific article published on May 9, 2013

List of works by Brian Jimenez

A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data

Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment

Blind prediction of interfacial water positions in CAPRI

CCharPPI web server: computational characterization of protein-protein interactions from structure

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges

IRaPPA: information retrieval based integration of biophysical models for protein assembly selection

Integrative modeling of membrane-associated protein assemblies

Integrative modeling of protein-protein interactions with pyDock for the new docking challenges

LightDock goes information-driven

LightDock: a new multi-scale approach to protein-protein docking.

Modeling Antibody-Antigen Complexes by Information-Driven Docking

PRODIGY-crystal: a web-tool for classification of biological interfaces in protein complexes

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

SKEMPI 2.0: An updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation

SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions

pyDockEneRes: per-residue decomposition of protein-protein docking energy

pyDockSAXS: protein-protein complex structure by SAXS and computational docking

pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring ⬇️