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List of works by Stephan Pabinger

A survey of tools for the analysis of quantitative PCR (qPCR) data

scientific article

A survey of tools for variant analysis of next-generation genome sequencing data

scientific article

Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers

scientific article

ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research.

scientific article

DaMold: A data-mining platform for variant annotation and visualization in molecular diagnostics research

scientific article

Draft Genome Sequence of Tannerella forsythia Type Strain ATCC 43037.

scientific article published on 11 June 2015

GAGE-B: an evaluation of genome assemblers for bacterial organisms

scientific article

Geographic origin is not supported by the genetic variability found in a large living collection of Jatropha curcas with accessions from three continents

scientific article

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data

scientific article

MEMOSys: Bioinformatics platform for genome-scale metabolic models

scientific article

MSP-HTPrimer: a high-throughput primer design tool to improve assay design for DNA methylation analysis in epigenetics

scientific article published on 21 September 2016

MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research

scientific article published on 05 March 2016

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics

scientific article published on 3 February 2016

Outer membrane vesicles of Tannerella forsythia: biogenesis, composition, and virulence

scientific article

Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages

scientific article

QPCR: Application for real-time PCR data management and analysis

scientific article

SIMPLEX: cloud-enabled pipeline for the comprehensive analysis of exome sequencing data

scientific article

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases

scientific article

SeqBench: integrated solution for the management and analysis of exome sequencing data.

scientific article

Substantial variation in the hepatitis B surface antigen (HBsAg) in hepatitis B virus (HBV)-positive patients from South Africa: Reliable detection of HBV by the Elecsys HBsAg II assay

scientific article published on 30 January 2018

The tuatara genome reveals ancient features of amniote evolution

scientific article published on 5 August 2020

Ultra-deep sequencing reveals high prevalence and broad structural diversity of hepatitis B surface antigen mutations in a global population

scientific article

[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem

scientific article published on 13 November 2013

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