List of works - Léon-Charles Tranchevent

A guide to web tools to prioritize candidate genes

scientific article published on 21 March 2010

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

scientific article

An unbiased evaluation of gene prioritization tools

article

BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome

scientific article published on 20 October 2011

Beegle: from literature mining to disease-gene discovery

scientific article published on 17 September 2015

Candidate gene prioritization with Endeavour.

scientific article published on 30 April 2016

Challenges of interpreting copy number variation in syndromic and non-syndromic congenital heart defects.

scientific article published on 13 September 2011

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.

scientific article published on August 2008

Computational tools for prioritizing candidate genes: boosting disease gene discovery ⬇️

scientific article published on 03 July 2012

Congenital heart defects in a novel recurrent 22q11.2 deletion harboring the genes CRKL and MAPK1.

scientific article published on 8 February 2012

ENDEAVOUR update: a web resource for gene prioritization in multiple species

scientific article

Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin.

scientific article published on 04 December 2013

Gene prioritization and clustering by multi-view text mining

scientific article

Haploinsufficiency of TAB2 causes congenital heart defects in humans

scientific article

Identification of protein features encoded by alternative exons using Exon Ontology.

scientific article published on 18 April 2017

Interplay between coding and exonic splicing regulatory sequences

scientific article published on 08 April 2019

Kernel-based data fusion for gene prioritization

scientific article

L2-norm multiple kernel learning and its application to biomedical data fusion.

scientific article

Large-scale benchmark of Endeavour using MetaCore maps

scientific article published on 10 June 2010

Network analysis of differential expression for the identification of disease-causing genes

scientific article

Optimized data fusion for K-means Laplacian clustering

scientific article

Optimized data fusion for kernel k-means clustering

scientific article

PINTA: a web server for network-based gene prioritization from expression data

scientific article

Physical-chemistry-based analysis of affymetrix microarray data.

scientific article

Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach.

scientific article

RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, miRNA, and splicing programs in cell differentiation

scientific journal article

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings

scientific article

The Ddx5 and Ddx17 RNA helicases are cornerstones in the complex regulatory array of steroid hormone-signaling pathways

scientific journal article

Using ribosomal protein genes as reference: a tale of caution

scientific article (publication date: 2008)

eXtasy: variant prioritization by genomic data fusion.

scientific article

iPSC-Derived Microglia as a Model to Study Inflammation in Idiopathic Parkinson's Disease

scientific article published on 05 November 2021

List of works by Léon-Charles Tranchevent

A guide to web tools to prioritize candidate genes

An expanded evaluation of protein function prediction methods shows an improvement in accuracy ⬇️

An unbiased evaluation of gene prioritization tools

BMPR1A is a candidate gene for congenital heart defects associated with the recurrent 10q22q23 deletion syndrome

Beegle: from literature mining to disease-gene discovery

Candidate gene prioritization with Endeavour.

Challenges of interpreting copy number variation in syndromic and non-syndromic congenital heart defects.

Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining.

Computational tools for prioritizing candidate genes: boosting disease gene discovery ⬇️

Congenital heart defects in a novel recurrent 22q11.2 deletion harboring the genes CRKL and MAPK1.

ENDEAVOUR update: a web resource for gene prioritization in multiple species

Endothelial, epithelial, and fibroblast cells exhibit specific splicing programs independently of their tissue of origin.

Gene prioritization and clustering by multi-view text mining

Haploinsufficiency of TAB2 causes congenital heart defects in humans

Identification of protein features encoded by alternative exons using Exon Ontology.

Interplay between coding and exonic splicing regulatory sequences

Kernel-based data fusion for gene prioritization

L2-norm multiple kernel learning and its application to biomedical data fusion.

Large-scale benchmark of Endeavour using MetaCore maps

Network analysis of differential expression for the identification of disease-causing genes

Optimized data fusion for K-means Laplacian clustering

Optimized data fusion for kernel k-means clustering

PINTA: a web server for network-based gene prioritization from expression data

Physical-chemistry-based analysis of affymetrix microarray data.

Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach.

RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, miRNA, and splicing programs in cell differentiation

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings

The Ddx5 and Ddx17 RNA helicases are cornerstones in the complex regulatory array of steroid hormone-signaling pathways

Using ribosomal protein genes as reference: a tale of caution

eXtasy: variant prioritization by genomic data fusion.

iPSC-Derived Microglia as a Model to Study Inflammation in Idiopathic Parkinson's Disease