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List of works by Marcus J Claesson

16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform

scientific article

A clinician's guide to microbiome analysis.

scientific article

A comparison of the gut microbiome between long-term users and non-users of proton pump inhibitors.

scientific article

Alterations in intestinal microbiota of elderly Irish subjects post-antibiotic therapy

article by Orla O'Sullivan et al published 4 September 2012 in Journal of Antimicrobial Chemotherapy

An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota.

scientific article

Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment

publication published on 19 February 2021

BlastXtract2: Improving early exploration of (meta) genomes

scientific article published on 30 April 2015

Butyrate Inhibits Osteoclast Activity <i>In Vitro</i> and Regulates Systemic Inflammation and Bone Healing in a Murine Osteotomy Model Compared to Antibiotic-Treated Mice

scientific article published on 10 December 2021

Categorization of the gut microbiota: enterotypes or gradients?

scientific article

Characterization of endogenous plasmids from Lactobacillus salivarius UCC118.

scientific article published on 04 April 2008

Characterization of pro-inflammatory flagellin proteins produced by Lactobacillus ruminis and related motile Lactobacilli

scientific article (publication date: 2012)

Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease

scientific article published on 23 March 2020

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

scientific article published on 20 August 2009

Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118

scientific article

Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei

scientific article

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

scientific article published on 5 February 2016

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

scientific article

Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir.

scientific article published on January 2017

Correlation of rRNA gene amplicon pyrosequencing and bacterial culture for microbial compositional analysis of faecal samples from elderly Irish subjects

scientific article published on 01 July 2011

Determinants of Reduced Genetic Capacity for Butyrate Synthesis by the Gut Microbiome in Crohn's Disease and Ulcerative Colitis

scientific article published in January 2018

Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets

scientific article published on 20 July 2021

Differential gene expression in the mesocorticolimbic system of innately high- and low-impulsive rats

scientific article published on 06 February 2019

Disturbance of the gut microbiota in early-life selectively affects visceral pain in adulthood without impacting cognitive or anxiety-related behaviors in male rats.

scientific article

Diversity of bifidobacteria within the infant gut microbiota

scientific article

Diversity of the genus Lactobacillus revealed by comparative genomics of five species

article

Effect of Lactobacillus salivarius bacteriocin Abp118 on the mouse and pig intestinal microbiota

scientific article

Esophageal microbiome in active eosinophilic esophagitis and changes induced by different therapies ⬇️

scientific article published on 29 March 2021

Evaluating the latest high-throughput molecular techniques for the exploration of microbial gut communities.

scientific article published on 24 March 2010

Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factor

scientific article

GI genomes

scientific article published on 01 May 2005

Genome-scale analyses of health-promoting bacteria: probiogenomics

scientific article

Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen

scientific article published on 27 January 2006

Gut microbiome, big data and machine learning to promote precision medicine for cancer

scientific article published on 09 July 2020

Gutted! Unraveling the Role of the Microbiome in Major Depressive Disorder

scientific article published on 01 January 2020

Host Microbiota Regulates Central Nervous System Serotonin Receptor 2C Editing in Rodents

scientific article published on 19 August 2019

Making Sense of … the Microbiome in Psychiatry

scientific article

Metaphor: finding bi-directional best hit homology relationships in (meta)genomic datasets

scientific article published on 27 October 2014

Microbes & neurodevelopment--Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala.

scientific article published on 13 July 2015

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

scientific article published on September 2016

Microbiome analysis as a platform R&D tool for parasitic nematode disease management

scientific article published on 25 June 2019

Multireplicon genome architecture of Lactobacillus salivarius

scholarly article

Phylogenomics and comparative genomics of Lactobacillus salivarius, a mammalian gut commensal.

scientific article published on 13 June 2017

Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences

scientific article published on 17 January 2020

Pro-inflammatory flagellin proteins of prevalent motile commensal bacteria are variably abundant in the intestinal microbiome of elderly humans

scientific article (publication date: 2013)

Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study

scientific article published on 14 June 2020

Regulation of prefrontal cortex myelination by the microbiota.

scientific article

SPINGO: a rapid species-classifier for microbial amplicon sequences

scientific article published on 8 October 2015

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice.

scientific article

Species classifier choice is a key consideration when analysing low-complexity food microbiome data

scientific article published on 20 March 2018

Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks

scientific article published on 16 June 2017

The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity

scientific article

The core faecal bacterial microbiome of Irish Thoroughbred racehorses ⬇️

scientific article published on August 19, 2013

The genus Lactobacillus--a genomic basis for understanding its diversity

scientific article published in April 2007

The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level

scientific article

Translating Omics to Food Microbiology.

scientific article published on 11 January 2017

Tumour-associated and non-tumour-associated microbiota in colorectal cancer

scientific article published on 18 March 2016

Unusual genome complexity in Lactobacillus salivarius JCM1046.

scientific article

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