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List of works by Philipp E. Bayer

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution.

scientific article published on 24 August 2016

A reference genome for pea provides insight into legume genome evolution

scientific article published on 02 September 2019

Acclimation to different depths by the marine angiosperm Posidonia oceanica: transcriptomic and proteomic profiles

scientific article

Adapting legume crops to climate change using genomic approaches.

scientific article published on 30 March 2018

An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance

scientific article published on 23 January 2017

An efficient approach to BAC based assembly of complex genomes

scientific article published on 20 January 2016

Assembly and comparison of two closely related Brassica napus genomes.

scientific article published on 12 April 2017

Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson

scientific article published on 07 December 2020

Author Correction: Plant pan-genomes are the new reference

scientific article published on 02 November 2020

Bias in resistance gene prediction due to repeat masking

article

BioNanoAnalyst: a visualisation tool to assess genome assembly quality using BioNano data.

scientific article published on 30 June 2017

Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis

scientific article published on 27 November 2015

Characterization of disease resistance genes in the Brassica napus pangenome reveals significant structural variation

scientific article published on 10 October 2019

Climate Clever Clovers: New Paradigm to Reduce the Environmental Footprint of Ruminants by Breeding Low Methanogenic Forages Utilizing Haplotype Variation

scientific article published on 5 September 2017

Climate change and the need for agricultural adaptation

scientific article published on 11 February 2020

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

CropSNPdb: a database of SNP array data for Brassica crops and hexaploid bread wheat

scientific article published on 28 January 2019

Establishing a distributed national research infrastructure providing bioinformatics support to life science researchers in Australia.

scientific article published on 30 June 2017

Evaluating Plant Gene Models Using Machine Learning

scientific article published in 2022

Exploring the genetic and adaptive diversity of a pan-Mediterranean crop wild relative: narrow-leafed lupin

scientific article published on 20 January 2018

Extensive polyploid clonality was a successful strategy for seagrass to expand into a newly submerged environment

scientific article published on 01 June 2022

Frontiers in Dissecting and Managing <i>Brassica</i> Diseases: From Reference-Based RGA Candidate Identification to Building Pan-RGAomes

scientific article published on 25 November 2020

Genetic Diversity Linked to Haplotype Variation in the World Core Collection of Trifolium subterraneum for Boron Toxicity Tolerance Provides Valuable Markers for Pasture Breeding

scientific article published on 30 August 2019

Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing

publication published on 08 February 2021

Genome-Wide Association Study of Genetic Control of Seed Fatty Acid Biosynthesis in Brassica napus

scientific article published on January 2016

Genome-Wide Identification and Evolution of Receptor-Like Kinases (RLKs) and Receptor like Proteins (RLPs) in <i>Brassica juncea</i>

scientific article published on 30 December 2020

Genome-wide identification and comparative analysis of NBS-LRR resistance genes in Brassica napus

article

Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution.

scientific article published in June 2018

Genotype–Environment mismatch of kelp forests under climate change

scientific article published in 2021

Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003

scientific article published on 09 February 2022

High intraspecific diversity of Restorer-of-fertility-like genes in barley

article

High-resolution molecular karyotyping uncovers pairing between ancestrally related Brassica chromosomes

scientific article published on 28 January 2014

High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus

scientific article published on 10 March 2015

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus

scientific article published on 10 January 2018

INDEL variation in the regulatory region of the major flowering time gene LanFTc1 is associated with vernalization response and flowering time in narrow-leafed lupin (Lupinus angustifolius L.)

article

Identification and characterization of more than 4 million intervarietal SNPs across the group 7 chromosomes of bread wheat

scientific article published on 22 August 2014

Improvements in Genomic Technologies: Application to Crop Genomics

scientific article published on 8 March 2017

Large-Scale Structural Variation Detection in Subterranean Clover Subtypes Using Optical Mapping

scientific article published on 17 July 2018

Legume Pangenome Construction Using an Iterative Mapping and Assembly Approach

scientific article published on 01 January 2020

Machine learning in agriculture: from silos to marketplaces

scientific article published on 02 December 2020

Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction

scientific article published on 08 April 2022

Method for Genome-Wide Association Study: A Soybean Example

scientific article published on 01 January 2020

Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications

scientific article published on 24 December 2019

Pangenomics and Crop Genome Adaptation in a Changing Climate

scientific article published in 2022

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

scientific article published on 21 August 2014

Plant pan-genomes are the new reference

scientific article published on 20 July 2020

Plant pangenomics: approaches, applications and advancements

scientific article published on 23 January 2020

Predicting Cloned Disease Resistance Gene Homologs (CDRHs) in Radish, Underutilised Oilseeds, and Wild Brassicaceae Species ⬇️

scientific article published on 8 November 2022

Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics

article

QTL Genetic Mapping Study for Traits Affecting Meal Quality in Winter Oilseed Rape (Brassica Napus L.)

scientific article published in 2021

Resources for image-based high-throughput phenotyping in crops and data sharing challenges

scientific article published in 2021

Shifting the limits in wheat research and breeding using a fully annotated reference genome

scientific article

Skim-Based Genotyping by Sequencing Using a Double Haploid Population to Call SNPs, Infer Gene Conversions, and Improve Genome Assemblies.

scientific article published on January 2016

Skim-based genotyping by sequencing

scientific article published in January 2015

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

scientific article published on 3 July 2016

The pangenome of an agronomically important crop plant Brassica oleracea

scientific article published on 11 November 2016

The pangenome of hexaploid bread wheat

scientific article

The western Mediterranean region provided the founder population of domesticated narrow-leafed lupin

scientific article published on 17 September 2018

Trait associations in the pangenome of pigeon pea (Cajanus cajan)

scientific article published on 05 February 2020

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome

scientific article published on 31 May 2018

Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes

scientific article published in 2022

openSNP--a crowdsourced web resource for personal genomics

scientific article (publication date: 2014)

runBNG: A software package for BioNano genomic analysis on the command line

scientific article published on 9 June 2017

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