List of works - Alain Charcosset

A European perspective on maize history.

scientific article published on February 2011

A common genetic determinism for sensitivities to soil water deficit and evaporative demand: meta-analysis of quantitative trait Loci and introgression lines of maize.

scientific article

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

scientific article (publication date: 2011)

A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

scientific article published on 15 October 2020

Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus

scientific article

Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program

scientific article published on 21 January 2019

Association mapping for cold tolerance in two large maize inbred panels

scientific article

Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits

scientific article published on 23 November 2016

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms ⬇️

scientific article published on August 1, 2012

BioMercator: integrating genetic maps and QTL towards discovery of candidate genes

scientific article published on 01 April 2004

Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism.

scientific article published on 23 August 2013

Combining quantitative trait Loci analysis and an ecophysiological model to analyze the genetic variability of the responses of maize leaf growth to temperature and water deficit.

scientific article

Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize

scientific article published on 20 May 2006

Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production

scientific article published on 10 October 2014

Detection of marker-QTL associations by studying change in marker frequencies with selection

scientific article published on 13 December 2006

Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering

scientific article published on 04 March 2020

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time

scientific article published on 24 May 2012

Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels

scientific article published on 11 January 2011

Efficient ReML inference in variance component mixed models using a Min-Max algorithm

scientific article published on 24 January 2022

Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs

scientific article published on 12 January 2017

Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10.

scientific article published on 12 October 2009

Flowering time in maize: linkage and epistasis at a major effect locus.

scientific article published on 31 January 2012

Fortune telling: metabolic markers of plant performance

scientific article

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents.

scientific article published on 2 December 2016

Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome.

scientific article

Genetic diversity and population structure of native maize populations in Latin America and the Caribbean

scientific article

Genome-Wide Analysis of Yield in Europe: Allelic Effects Vary with Drought and Heat Scenarios.

scientific article

Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs

scientific article published on 08 October 2019

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank.

scientific article published on 05 August 2017

Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.

scientific article

Intraspecific variation of recombination rate in maize

scientific article

Large scale molecular analysis of traditional European maize populations. Relationships with morphological variation

scientific article published on 01 May 2001

Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.).

scientific article

Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize

scientific article

Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene

scientific article

Maize genetic diversity and association mapping using transposable element insertion polymorphisms ⬇️

scientific article published on February 18, 2012

Maize introduction into Europe: the history reviewed in the light of molecular data.

scientific article

Mapping of a spontaneous mutation for early flowering time in maize highlights contrasting allelic series at two-linked QTL on chromosome 8.

scientific article

Marker-Assisted Introgression of Quantitative Trait Loci ⬇️

scientific article published on November 1, 1997

Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines.

scientific article published on December 2002

Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.).

scientific article

Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes

scientific article published on 25 July 2010

MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments

scientific article

OptiMAS: a decision support tool to conduct marker-assisted selection programs.

scientific article published in January 2014

Out of America: tracing the genetic footprints of the global diffusion of maize

scientific article published on 07 August 2013

Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize

scientific article published on 09 September 2008

Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations.

scientific article published on 9 August 2017

QTLs and candidate genes for desiccation and abscisic acid content in maize kernels

scientific article

RFLP diversity and relationships among traditional European maize populations

scientific article published on 17 May 2002

Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups.

scientific article published on 28 September 2017

Recovering power in association mapping panels with variable levels of linkage disequilibrium

scientific article

Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs

scientific article published on 17 March 2020

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

scientific article

Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds.

scientific article

The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations.

scientific article

The genetic basis of heterosis: multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.).

scientific article published on 30 November 2011

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.

scientific article published on 30 November 2006

Use of trial clustering to study QTL x environment effects for grain yield and related traits in maize

scientific article published on 12 November 2004

Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression

scientific article published on 07 May 2019

Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction

scientific article

List of works by Alain Charcosset

A European perspective on maize history.

A common genetic determinism for sensitivities to soil water deficit and evaporative demand: meta-analysis of quantitative trait Loci and introgression lines of maize.

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus

Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program

Association mapping for cold tolerance in two large maize inbred panels

Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms ⬇️

BioMercator: integrating genetic maps and QTL towards discovery of candidate genes

Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism.

Combining quantitative trait Loci analysis and an ecophysiological model to analyze the genetic variability of the responses of maize leaf growth to temperature and water deficit.

Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize

Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production

Detection of marker-QTL associations by studying change in marker frequencies with selection

Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time

Effect of population structure corrections on the results of association mapping tests in complex maize diversity panels

Efficient ReML inference in variance component mixed models using a Min-Max algorithm

Estimation of the relatedness coefficients from biallelic markers, application in plant mating designs

Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10.

Flowering time in maize: linkage and epistasis at a major effect locus.

Fortune telling: metabolic markers of plant performance

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents.

Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome.

Genetic diversity and population structure of native maize populations in Latin America and the Caribbean

Genome-Wide Analysis of Yield in Europe: Allelic Effects Vary with Drought and Heat Scenarios.

Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank.

Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts.

Intraspecific variation of recombination rate in maize

Large scale molecular analysis of traditional European maize populations. Relationships with morphological variation

Linkage Analysis and Association Mapping QTL Detection Models for Hybrids Between Multiparental Populations from Two Heterotic Groups: Application to Biomass Production in Maize (Zea mays L.).

Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize

Maize adaptation to temperate climate: relationship between population structure and polymorphism in the Dwarf8 gene

Maize genetic diversity and association mapping using transposable element insertion polymorphisms ⬇️

Maize introduction into Europe: the history reviewed in the light of molecular data.

Mapping of a spontaneous mutation for early flowering time in maize highlights contrasting allelic series at two-linked QTL on chromosome 8.

Marker-Assisted Introgression of Quantitative Trait Loci ⬇️

Marker-assisted introgression of favorable alleles at quantitative trait loci between maize elite lines.

Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.).

Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes

MetaQTL: a package of new computational methods for the meta-analysis of QTL mapping experiments

OptiMAS: a decision support tool to conduct marker-assisted selection programs.

Out of America: tracing the genetic footprints of the global diffusion of maize

Patterns of molecular evolution associated with two selective sweeps in the Tb1-Dwarf8 region in maize

Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations.

QTLs and candidate genes for desiccation and abscisic acid content in maize kernels

RFLP diversity and relationships among traditional European maize populations

Reciprocal Genetics: Identifying QTL for General and Specific Combining Abilities in Hybrids Between Multiparental Populations from Two Maize (Zea mays L.) Heterotic Groups.

Recovering power in association mapping panels with variable levels of linkage disequilibrium

Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs

Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

Standing variation and new mutations both contribute to a fast response to selection for flowering time in maize inbreds.

The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations.

The genetic basis of heterosis: multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.).

Two cytosolic glutamine synthetase isoforms of maize are specifically involved in the control of grain production.

Use of trial clustering to study QTL x environment effects for grain yield and related traits in maize

Usefulness Criterion and Post-selection Parental Contributions in Multi-parental Crosses: Application to Polygenic Trait Introgression

Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction