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List of works by Paulo P Amaral

A lncRNA fine tunes the dynamics of a cell state transition involving Lin28, let-7 and de novo DNA methylation

scientific article published on 18 August 2017

Androgen responsive intronic non-coding RNAs

scientific article

Complex architecture and regulated expression of the Sox2ot locus during vertebrate development

scientific article

Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription

scientific article published on January 2007

Genomic positional conservation identifies topological anchor point (tap)RNAs linked to developmental loci

Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci.

scientific article

Interaction of Sox2 with RNA binding proteins in mouse embryonic stem cells

scientific article published on 09 May 2019

Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination

scientific article published on 09 August 2019

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

scientific article

MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

scientific article

Non-coding RNAs in homeostasis, disease and stress responses: an evolutionary perspective

scientific article published on May 2013

Noncoding RNA in development

scientific article

Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications

scientific article

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes

scientific article published on 7 October 2012

RNA modifications detection by comparative Nanopore direct RNA sequencing

scientific article

RNA regulation of epigenetic processes

scientific article (publication date: 2009)

Re-place your BETs: the dynamics of super enhancers

scientific article

The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation

scientific article

The evolution of knowledge on genes associated with human diseases

scientific article

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells

scientific article published on January 2013

The reality of pervasive transcription

scientific article

lncRNAdb: a reference database for long noncoding RNAs

scientific article