List of works - Bernhard M Fuchs

"Pomacytosis"-Semi-extracellular phagocytosis of cyanobacteria by the smallest marine algae.

scientific article

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

scientific article

A pipeline for targeted metagenomics of environmental bacteria

scientific article published on 15 February 2020

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms

scientific article published on 30 July 2018

Ammonium and attachment of Rhodopirellula baltica

scientific article published on 22 February 2011

An alternative polysaccharide uptake mechanism of marine bacteria.

scientific article published on 21 March 2017

Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru

scientific article published on 27 November 2019

Atlantic water influx and sea-ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities

scientific article published in 2023

Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

scientific article

Bacterioplankton diversity and community composition in the Southern Lagoon of Venice

scientific article

Bacterioplankton reveal years-long retention of Atlantic deep-ocean water by the Tropic Seamount

scientific article published on 13 March 2020

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae

scientific article published on 20 August 2018

Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques

scientific article published on 01 April 2000

Chlamydial seasonal dynamics and isolation of 'Candidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake

scientific article

Clone libraries and single cell genome amplification reveal extended diversity of uncultivated magnetotactic bacteria from marine and freshwater environments

scientific article

Colonization in the photic zone and subsequent changes during sinking determine bacterial community composition in marine snow

scientific article

Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre ⬇️

scientific article published on October 25, 2012

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization.

scientific article

Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea

scientific article

Concepts and software for a rational design of polynucleotide probes.

scientific article published in February 2011

Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean.

scientific article

Depth related amino acid uptake by Prochlorococcus cyanobacteria in the Southern Atlantic tropical gyre.

scientific article published on November 2004

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

scientific article published on 10 December 2008

Development of a 16S rRNA-targeted fluorescence in situ hybridization probe for quantification of the ammonia-oxidizer Nitrosotalea devanaterra and its relatives

article

Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea.

scientific article published on 13 April 2014

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.

scientific article published on 27 June 2016

Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom

scientific article published in 2023

Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean

scientific article

Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea

scientific article published on 16 March 2007

Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.

scientific article

Flow cytometric identification of Mamiellales clade II in the Southern Atlantic Ocean.

scientific article published on 29 October 2012

Flow cytometric sorting of fecal bacteria after in situ hybridization with polynucleotide probes

scientific article

Genomic and physiological analyses of 'Reinekea forsetii' reveal a versatile opportunistic lifestyle during spring algae blooms

scientific article published on 21 December 2016

Graphical representation of ribosomal RNA probe accessibility data using ARB software package

scientific article

High abundance of novel environmental chlamydiae in a Tyrrhenian coastal lake (Lago di Paola, Italy).

scientific article

Highly diverse flavobacterial phages isolated from North Sea spring blooms

scientific article published in 2021

In situ accessibility of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oligonucleotide probes comprising the D1 and D2 domains.

scientific article

In situ visualization of glycoside hydrolase family 92 genes in marine flavobacteria

scientific article published in 2021

Internal and external influences on near-surface microbial community structure in the vicinity of the Cape Verde Islands

scientific article

Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?

scientific article

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.

scientific article

Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea.

scientific article published in May 2001

Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms.

scientific article

Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

scientific article

MiL-FISH: Multilabeled Oligonucleotides for Fluorescence In Situ Hybridization Improve Visualization of Bacterial Cells

scientific article

Microbial community response during the iron fertilization experiment LOHAFEX.

scientific article

Microbial control of phosphate in the nutrient-depleted North Atlantic subtropical gyre

scientific article published on 01 August 2007

Modification of a High-Throughput Automatic Microbial Cell Enumeration System for Shipboard Analyses

scientific article

Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota

scientific article published on 26 August 2019

Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group

scientific article published on 15 February 2022

On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre

scientific article published on 01 July 2019

Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria.

scientific article

Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean.

scientific article

Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms

scientific article published on 19 February 2020

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

scientific article

Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system

scientific article

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

scientific article published on 16 December 2010

Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.

scientific article

Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH).

scientific article published on 13 July 2015

Rapid turnover of dissolved DMS and DMSP by defined bacterioplankton communities in the stratified euphotic zone of the North Sea

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

scientific article published on 7 April 2016

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

scientific article

Seasonal dynamics and modeling of a Vibrio community in coastal waters of the North Sea.

scientific article published on 28 December 2011

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation

scientific article published on 07 December 2018

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

scientific article published on May 2008

Stable composition of the nano- and picoplankton community during the ocean iron fertilization experiment LOHAFEX.

scientific article

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom

scientific article

Temporal variability of coastal Planctomycetes clades at Kabeltonne station, North Sea

scientific article published on 3 June 2011

The effect of nucleobase-specific fluorescence quenching on in situ hybridization with rRNA-targeted oligonucleotide probes.

scientific article published in September 2004

The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis.

scientific article published on 23 December 2014

The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov.

scientific article

The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle

scientific article

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

scientific article published on 12 February 2016

Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes.

scientific article published on August 2000

Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms

scientific article published on 07 September 2021

List of works by Bernhard M Fuchs

"Pomacytosis"-Semi-extracellular phagocytosis of cyanobacteria by the smallest marine algae.

A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones

A pipeline for targeted metagenomics of environmental bacteria

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms

Ammonium and attachment of Rhodopirellula baltica

An alternative polysaccharide uptake mechanism of marine bacteria.

Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru

Atlantic water influx and sea-ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities

Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization.

Bacterioplankton diversity and community composition in the Southern Lagoon of Venice

Bacterioplankton reveal years-long retention of Atlantic deep-ocean water by the Tropic Seamount

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae

Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques

Chlamydial seasonal dynamics and isolation of 'Candidatus Neptunochlamydia vexilliferae' from a Tyrrhenian coastal lake

Clone libraries and single cell genome amplification reveal extended diversity of uncultivated magnetotactic bacteria from marine and freshwater environments

Colonization in the photic zone and subsequent changes during sinking determine bacterial community composition in marine snow

Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre ⬇️

Comparison of bacterial communities on limnic versus coastal marine particles reveals profound differences in colonization.

Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea

Concepts and software for a rational design of polynucleotide probes.

Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean.

Depth related amino acid uptake by Prochlorococcus cyanobacteria in the Southern Atlantic tropical gyre.

Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

Development of a 16S rRNA-targeted fluorescence in situ hybridization probe for quantification of the ammonia-oxidizer Nitrosotalea devanaterra and its relatives

Dilution cultivation of marine heterotrophic bacteria abundant after a spring phytoplankton bloom in the North Sea.

Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.

Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom

Distinct flavobacterial communities in contrasting water masses of the north Atlantic Ocean

Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby Mud Volcano, Barents Sea

Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes.

Flow cytometric identification of Mamiellales clade II in the Southern Atlantic Ocean.

Flow cytometric sorting of fecal bacteria after in situ hybridization with polynucleotide probes

Genomic and physiological analyses of 'Reinekea forsetii' reveal a versatile opportunistic lifestyle during spring algae blooms

Graphical representation of ribosomal RNA probe accessibility data using ARB software package

High abundance of novel environmental chlamydiae in a Tyrrhenian coastal lake (Lago di Paola, Italy).

Highly diverse flavobacterial phages isolated from North Sea spring blooms

In situ accessibility of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oligonucleotide probes comprising the D1 and D2 domains.

In situ visualization of glycoside hydrolase family 92 genes in marine flavobacteria

Internal and external influences on near-surface microbial community structure in the vicinity of the Cape Verde Islands

Is the in situ accessibility of the 16S rRNA of Escherichia coli for Cy3-labeled oligonucleotide probes predicted by a three-dimensional structure model of the 30S ribosomal subunit?

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.

Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea.

Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms.

Metabolic versatility of a novel N2 -fixing Alphaproteobacterium isolated from a marine oxygen minimum zone.

MiL-FISH: Multilabeled Oligonucleotides for Fluorescence In Situ Hybridization Improve Visualization of Bacterial Cells

Microbial community response during the iron fertilization experiment LOHAFEX.

Microbial control of phosphate in the nutrient-depleted North Atlantic subtropical gyre

Modification of a High-Throughput Automatic Microbial Cell Enumeration System for Shipboard Analyses

Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota

Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group

On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre

Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport of key sulfur oxidizing bacteria.

Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean.

Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms

Polysaccharide utilisation loci of Bacteroidetes from two contrasting open ocean sites in the North Atlantic.

Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany.

Rapid and sensitive identification of marine bacteria by an improved in situ DNA hybridization chain reaction (quickHCR-FISH).

Rapid turnover of dissolved DMS and DMSP by defined bacterioplankton communities in the stratified euphotic zone of the North Sea

Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

Seasonal dynamics and modeling of a Vibrio community in coastal waters of the North Sea.

Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.

Stable composition of the nano- and picoplankton community during the ocean iron fertilization experiment LOHAFEX.

Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom

Temporal variability of coastal Planctomycetes clades at Kabeltonne station, North Sea

The effect of nucleobase-specific fluorescence quenching on in situ hybridization with rRNA-targeted oligonucleotide probes.

The effect of nutrients on carbon and nitrogen fixation by the UCYN-A-haptophyte symbiosis.

The photosynthetic apparatus and its regulation in the aerobic gammaproteobacterium Congregibacter litoralis gen. nov., sp. nov.

The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes.

Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms