List of works by Fabian Amman

2D meets 4G: G-quadruplexes in RNA secondary structure prediction

scientific article published in July 2013

A high resolution A-to-I editing map in the mouse identifies editing events controlled by pre-mRNA splicing

scientific article published on 19 August 2019

ADAR-deficiency perturbs the global splicing landscape in mouse tissues

scientific article published on 29 July 2020

Accurate Mapping of tRNA Reads.

scientific article

Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima

scientific article

Alterations of the transcriptome of Sulfolobus acidocaldarius by exoribonuclease aCPSF2.

scientific article

An internal deletion of ADAR rescued by MAVS deficiency leads to a minute phenotype

scientific article published on 01 April 2020

Animal snoRNAs and scaRNAs with exceptional structures

scientific article published on November 2011

Archaeal signal transduction: impact of protein phosphatase deletions on cell size, motility, and energy metabolism in Sulfolobus acidocaldarius

scientific article published on 27 September 2013

Bioinformatics of prokaryotic RNAs

scientific article

Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis

scientific article published on 24 June 2019

Comparative genomics of Czech vaccine strains of Bordetella pertussis

scholarly article by Ana Dienstbier et al published 3 September 2018 in Pathogens and disease

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

scientific article

Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions

scientific article

Fast accessibility-based prediction of RNA-RNA interactions

scientific article published on 18 May 2011

Identification of RNA 3´ ends and termination sites in Haloferax volcanii

scientific article published on 10 February 2020

Impact of Hfq on the Bacillus subtilis transcriptome

scientific article

Inosine induces context-dependent recoding and translational stalling.

scientific article

MSF: Modulated Sub-graph Finder

MSF: Modulated Sub-graph Finder

scientific article published on 29 August 2018

Modelling translation initiation under the influence of sRNA

scientific article published on 30 November 2012

Nascent RNA signaling to yeast RNA Pol II during transcription elongation.

scientific article published on 23 March 2018

Negative Control of RpoS Synthesis by the sRNA ReaL in

scientific article published on 29 October 2018

Organ-wide profiling in mouse reveals high editing levels of Filamin B mRNA in the musculoskeletal system

scientific article published on 31 July 2018

Primary transcriptome analysis reveals importance of IS elements for the shaping of the transcriptional landscape of Bordetella pertussis.

scientific article

RNA Folding Algorithms with G-Quadruplexes

RNASeq Based Transcriptional Profiling of Pseudomonas aeruginosa PA14 after Short- and Long-Term Anoxic Cultivation in Synthetic Cystic Fibrosis Sputum Medium

scientific article published on 28 January 2016

TSSAR: TSS annotation regime for dRNA-seq data

scientific article

The Anaerobically Induced sRNA PaiI Affects Denitrification in Pseudomonas aeruginosa PA14.

scientific article published on 23 November 2017

The SmAP1/2 proteins of the crenarchaeon Sulfolobus solfataricus interact with the exosome and stimulate A-rich tailing of transcripts

scientific article published on 18 May 2017

The Trouble with Long-Range Base Pairs in RNA Folding

article published in 2013

Transcriptional Responses to IFN-γ Require Mediator Kinase-Dependent Pause Release and Mechanistically Distinct CDK8 and CDK19 Functions

scientific article published on 05 September 2019

Transcriptional profiling of Bordetella pertussis reveals requirement of RNA chaperone Hfq for Type III secretion system functionality.

scientific article

Transcriptional profiling of human macrophages during infection with Bordetella pertussis

scientific article published on 19 February 2020

ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines

scientific article

iRAPs curb antisense transcription in E. coli

scientific article published on 01 November 2019

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