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List of works by Martin Hölzer

A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes

scientific article published on 30 September 2019

A decade of de novo transcriptome assembly: Are we there yet?

scientific article published on 08 October 2020

Carbon fixation rates in groundwater similar to those in oligotrophic marine systems

scientific article published in 2022

Chlamydia buteonis, a new Chlamydia species isolated from a red-shouldered hawk

scientific article published on 19 June 2019

Cohesin-mediated NF-κB signaling limits hematopoietic stem cell self-renewal in aging and inflammation

scientific article published on 07 December 2018

Comparative Genome Analysis of 33 Chlamydia Strains Reveals Characteristic Features of Chlamydia Psittaci and Closely Related Species

scientific article published on 28 October 2020

Complete Genome Sequence of JII-1961, a Bovine Mycobacterium avium subsp. paratuberculosis Field Isolate from Germany

scientific article published on 24 August 2017

Comprehensive insights in the Mycobacterium avium subsp. paratuberculosis genome using new WGS data of sheep strain JIII-386 from Germany

scientific article

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

scientific article published on 23 May 2020

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

scientific article published on 04 November 2020

De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers

scientific article published on 01 May 2019

Differential Effects of Vitamins A and D on the Transcriptional Landscape of Human Monocytes during Infection.

scientific article published on 17 January 2017

Differential transcriptional responses to Ebola and Marburg virus infection in bat and human cells

scientific article

Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis

scientific article published in September 2019

Direct RNA nanopore sequencing of full-length coronavirus genomes provides novel insights into structural variants and enables modification analysis

scientific article published on 01 December 2018

Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters

scientific article published on 28 May 2019

Evaluation of associations between genotypes of Mycobacterium avium subsp. paratuberculsis and presence of intestinal lesions characteristic of paratuberculosis

scientific article

Evidence for the existence of a new genus Chlamydiifrater gen. nov. inside the family Chlamydiaceae with two new species isolated from flamingo (Phoenicopterus roseus): Chlamydiifrater phoenicopteri sp. nov. and Chlamydiifrater volucris sp. nov.

scientific article published in 2021

Evolution and Antiviral Specificities of Interferon-Induced Mx Proteins of Bats against Ebola, Influenza, and Other RNA Viruses.

scientific article published on 10 May 2017

Massive Effect on LncRNAs in Human Monocytes During Fungal and Bacterial Infections and in Response to Vitamins A and D.

scientific article published on 17 January 2017

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)

scientific article published on 09 February 2021

PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection

scientific article published on 21 May 2020

RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow ⬇️

scientific article published on 10 December 2020

SLC35F2, a Transporter Sporadically Mutated in the Untranslated Region, Promotes Growth, Migration, and Invasion of Bladder Cancer Cells

scientific article published on 06 January 2021

SilentMutations (SIM): a tool for analyzing long-range RNA-RNA interactions in viral genomes and structured RNAs

scientific article published on 12 November 2018

SilentMutations (SIM): a tool for analyzing long-range RNA-RNA interactions in viral genomes and structured RNAs

scientific article published on 23 September 2018

Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".

scientific article published on 28 September 2017

Structure and Hierarchy of Influenza Virus Models Revealed by Reaction Network Analysis.

scientific article

Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes

scientific article published on 30 July 2015

Virus- and Interferon Alpha-Induced Transcriptomes of Cells from the Microbat Myotis daubentonii

scientific article published on 10 August 2019

Whole-Genome Sequence of Chlamydia gallinacea Type Strain 08-1274/3.

scientific article published on 21 July 2016

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