List of works - Takeshi Itoh

A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map (supplement).

scientific article

A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map.

scientific article published in December 1996

A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map (supplement)

scientific article published on 01 December 1996

A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map.

scientific article published in December 1996

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.

scientific article

A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and Arabidopsis

scientific article published on 9 January 2014

A simple method for estimating the intensity of purifying selection in protein-coding genes.

scientific article published in January 1999

A web tool for comparative genomics: G-compass

article

A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy

scientific article published on 15 August 2013

Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts.

scientific article

Alternative splicing in human transcriptome: functional and structural influence on proteins.

scientific article

Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5.

scientific article

Biased biological functions of horizontally transferred genes in prokaryotic genomes

scientific article

Birth and death of genes promoted by transposable elements in Oryza sativa

scientific article

Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat

scientific article

Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system

scientific article

Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries.

scientific article

Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features.

scientific article published on April 1997

Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice

scientific article

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

scientific article

Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysis

scientific article

Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles

scientific article published on 16 July 2013

Efficient plant gene identification based on interspecies mapping of full-length cDNAs.

scientific article

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

scientific article

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

scientific article

Foreign DNA detection by high-throughput sequencing to regulate genome-edited agricultural products

scientific article published on 18 March 2020

Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes

article

G-compass: a web-based comparative genome browser between human and other vertebrate genomes

scientific article published on 21 October 2009

Gene tree discordance of wild and cultivated Asian rice deciphered by genome-wide sequence comparison

scientific article published on 28 January 2011

Genome editing in plants by engineered CRISPR-Cas9 recognizing NG PAM

scientific article published on 10 December 2018

Genome plasticity as a paradigm of eubacteria evolution ⬇️

scientific article published on January 1, 1997

Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice

scientific article

Genome-wide validation of Magnaporthe grisea gene structures based on transcription evidence

scientific article

Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis

scientific article

Improvement of barley genome annotations by deciphering the Haruna Nijo genome

scientific article published on 29 November 2015

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

scientific article

In silico identification of short nucleotide sequences associated with gene expression of pollen development in rice

scientific article

Independent domestication of Asian rice followed by gene flow from japonica to indica

scientific article published on 22 December 2011

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

scientific article

Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB).

scientific article

Large-scale analysis by full-length cDNA sequences

scientific article published in November 2003

MEGANTE: a web-based system for integrated plant genome annotation.

scientific article

Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

scientific article

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

scientific article

Next-generation survey sequencing and the molecular organization of wheat chromosome 6B.

scientific article published on October 2013

Phylogenetic analysis of the third hsp70 homolog in Escherichia coli; a novel member of the Hsc66 subfamily and its possible co-chaperone.

scientific article published on October 1999

Rate and polarity of gene fusion and fission in Oryza sativa and Arabidopsis thaliana

scientific article published on 11 October 2006

Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes

scientific article published on 31 October 2011

Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics

scientific article published on 7 January 2013

SALAD database: a motif-based database of protein annotations for plant comparative genomics

scientific article

Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction

scientific article

Simultaneous induction of mutant alleles of two allergenic genes in soybean by using site-directed mutagenesis

scientific article published on 11 November 2020

TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.

scientific article

TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice

scientific article published on 16 November 2015

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

scientific article

The Nipponbare genome and the next-generation of rice genomics research in Japan

scientific article

The Rice Annotation Project Database (RAP-DB): 2008 update

scientific article

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

scientific article

The Vigna Genome Server, 'VigGS': A Genomic Knowledge Base of the Genus Vigna Based on High-Quality, Annotated Genome Sequence of the Azuki Bean, Vigna angularis (Willd.) Ohwi & Ohashi.

scientific article

The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome

scientific article

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

scientific article

Unlocking the barley genome by chromosomal and comparative genomics

scientific article published on 5 April 2011

Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting

scientific article

[Complete rice genome sequence information: the key for elucidation of Rosetta stones of other cereal genome]

scientific article published on 01 December 2005

bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genes

scientific article published on December 2013

List of works by Takeshi Itoh

A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map (supplement).

A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map.

A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map (supplement)

A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map.

A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 12.7-28.0 min region on the linkage map.

A novel rice cytochrome P450 gene, CYP72A31, confers tolerance to acetolactate synthase-inhibiting herbicides in rice and Arabidopsis

A simple method for estimating the intensity of purifying selection in protein-coding genes.

A web tool for comparative genomics: G-compass

A whole-genome analysis of a transgenic rice seed-based edible vaccine against cedar pollen allergy

Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts.

Alternative splicing in human transcriptome: functional and structural influence on proteins.

Asymmetric distribution of gene expression in the centromeric region of rice chromosome 5.

Biased biological functions of horizontally transferred genes in prokaryotic genomes

Birth and death of genes promoted by transposable elements in Oryza sativa

Characterisation of the wheat (Triticum aestivum L.) transcriptome by de novo assembly for the discovery of phosphate starvation-responsive genes: gene expression in Pi-stressed wheat

Comparative genomics of bidirectional gene pairs and its implications for the evolution of a transcriptional regulation system

Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries.

Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features.

Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

Distinct evolutionary patterns of Oryza glaberrima deciphered by genome sequencing and comparative analysis

Diversity in the complexity of phosphate starvation transcriptomes among rice cultivars based on RNA-Seq profiles

Efficient plant gene identification based on interspecies mapping of full-length cDNAs.

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

Foreign DNA detection by high-throughput sequencing to regulate genome-edited agricultural products

Frequent emergence and functional resurrection of processed pseudogenes in the human and mouse genomes

G-compass: a web-based comparative genome browser between human and other vertebrate genomes

Gene tree discordance of wild and cultivated Asian rice deciphered by genome-wide sequence comparison

Genome editing in plants by engineered CRISPR-Cas9 recognizing NG PAM

Genome plasticity as a paradigm of eubacteria evolution ⬇️

Genome-wide transcriptome analysis reveals that cadmium stress signaling controls the expression of genes in drought stress signal pathways in rice

Genome-wide validation of Magnaporthe grisea gene structures based on transcription evidence

Highly diversified molecular evolution of downstream transcription start sites in rice and Arabidopsis

Improvement of barley genome annotations by deciphering the Haruna Nijo genome

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

In silico identification of short nucleotide sequences associated with gene expression of pollen development in rice

Independent domestication of Asian rice followed by gene flow from japonica to indica

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

Investigation of protein functions through data-mining on integrated human transcriptome database, H-Invitational database (H-InvDB).

Large-scale analysis by full-length cDNA sequences

MEGANTE: a web-based system for integrated plant genome annotation.

Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

Next-generation survey sequencing and the molecular organization of wheat chromosome 6B.

Phylogenetic analysis of the third hsp70 homolog in Escherichia coli; a novel member of the Hsc66 subfamily and its possible co-chaperone.

Rate and polarity of gene fusion and fission in Oryza sativa and Arabidopsis thaliana

Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes

Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics

SALAD database: a motif-based database of protein annotations for plant comparative genomics

Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction

Simultaneous induction of mutant alleles of two allergenic genes in soybean by using site-directed mutagenesis

TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.

TENOR: Database for Comprehensive mRNA-Seq Experiments in Rice

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

The Nipponbare genome and the next-generation of rice genomics research in Japan

The Rice Annotation Project Database (RAP-DB): 2008 update

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information

The Vigna Genome Server, 'VigGS': A Genomic Knowledge Base of the Genus Vigna Based on High-Quality, Annotated Genome Sequence of the Azuki Bean, Vigna angularis (Willd.) Ohwi & Ohashi.

The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes

Unlocking the barley genome by chromosomal and comparative genomics

Whole-genome analysis of herbicide-tolerant mutant rice generated by Agrobacterium-mediated gene targeting

[Complete rice genome sequence information: the key for elucidation of Rosetta stones of other cereal genome]

bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genes