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List of works by Jayashree Kalpathy-Cramer

3D Slicer as an image computing platform for the Quantitative Imaging Network

scientific article (publication date: November 2012)

A Comparison of Lung Nodule Segmentation Algorithms: Methods and Results from a Multi-institutional Study

scientific article published on 3 February 2016

A Ferret-based gastrointestinal image retrieval system.

scientific article published on 11 October 2007

A Multi-Institutional Comparison of Dynamic Contrast-Enhanced Magnetic Resonance Imaging Parameter Calculations

scientific article

A Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning to Monitor Disease Regression After Treatment

scientific article published on 03 July 2019

A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop.

scientific article

A decade of community-wide efforts in advancing medical image understanding and retrieval

scientific article published on 01 January 2015

A pilot prospective feasibility study of organ-at-risk definition using Target Contour Testing/Instructional Computer Software (TaCTICS), a training and evaluation platform for radiotherapy target delineation ⬇️

scientific article published on October 22, 2011

A prospective in silico analysis of interdisciplinary and interobserver spatial variability in post-operative target delineation of high-risk oral cavity cancers: Does physician specialty matter?

scientific article published on 02 August 2018

ABCD1 dysfunction alters white matter microvascular perfusion

scientific article published on 9 November 2017

AT-16PHASE II STUDY OF TIVOZANIB, AN ORAL VEGFR INHIBITOR, IN PATIENTS WITH RECURRENT GLIOBLASTOMA

Accounting for data variability in multi-institutional distributed deep learning for medical imaging

scientific article published on 20 March 2020

Accuracy and Reliability of Eye-Based vs Quadrant-Based Diagnosis of Plus Disease in Retinopathy of Prematurity

scientific article published on 01 June 2018

Accuracy, repeatability, and interplatform reproducibility of T1 quantification methods used for DCE-MRI: Results from a multicenter phantom study.

scientific article published on 14 September 2017

Accurate determination of imaging modality using an ensemble of text- and image-based classifiers

scientific article published on February 2012

Advanced magnetic resonance imaging of the physical processes in human glioblastoma

scientific article

Aggressive Posterior Retinopathy of Prematurity: Clinical and Quantitative Imaging Features in a Large North American Cohort

scientific article published on 07 February 2020

An interactive tool for individualized estimation of conditional survival in rectal cancer ⬇️

scientific article

An quality assurance study of contouring target volumes in thoracic tumors within a cooperative group setting

article

Analysis of Stroke Detection during the COVID-19 Pandemic Using Natural Language Processing of Radiology Reports

scientific article published on 17 December 2020

Analysis of underlying causes of inter-expert disagreement in retinopathy of prematurity diagnosis. Application of machine learning principles.

scientific article

Artificial Intelligence in Retinopathy of Prematurity Diagnosis

scientific article published on 10 February 2020

Assessing the Trustworthiness of Saliency Maps for Localizing Abnormalities in Medical Imaging

scientific article published on 06 October 2021

Auto-segmentation of the brachial plexus assessed with TaCTICS - a software platform for rapid multiple-metric quantitative evaluation of contours

scientific article published on 3 October 2014

Automated Assessment and Tracking of COVID-19 Pulmonary Disease Severity on Chest Radiographs using Convolutional Siamese Neural Networks

scientific article published on 22 July 2020

Automated Diagnosis of Plus Disease in Retinopathy of Prematurity Using Deep Convolutional Neural Networks

scholarly article by James M Brown et al published 1 July 2018 in JAMA Ophthalmology

Automated Fundus Image Quality Assessment in Retinopathy of Prematurity Using Deep Convolutional Neural Networks

scientific article published on 31 January 2019

Automated assessment of COVID-19 pulmonary disease severity on chest radiographs using convolutional Siamese neural networks

scientific article published on 26 May 2020

Automatic assessment of glioma burden: a deep learning algorithm for fully automated volumetric and bidimensional measurement

scientific article published on 01 November 2019

Automatic image modality based classification and annotation to improve medical image retrieval

scientific article published in January 2007

Bevacizumab Reduces Permeability and Concurrent Temozolomide Delivery in a Subset of Patients with Recurrent Glioblastoma

scientific article published on 26 September 2019

CM-101: Type I Collagen-targeted MR Imaging Probe for Detection of Liver Fibrosis

scientific article

COVID-19 Outpatient Screening: a Prediction Score for Adverse Events

scientific article published on 22 June 2020

Challenges Related to Artificial Intelligence Research in Medical Imaging and the Importance of Image Analysis Competitions

scientific article published on 30 January 2019

Classification and comparison via neural networks

scientific article published on 19 June 2019

Collaborative Privacy-preserving Approaches for Distributed Deep Learning Using Multi-Institutional Data

scientific article published in 2023

Comparing the quality of accessing medical literature using content-based visual and textual information retrieval

article

Computational Challenges and Collaborative Projects in the NCI Quantitative Imaging Network

scientific article published on December 2016

Computer-Based Image Analysis for Plus Disease Diagnosis in Retinopathy of Prematurity: Performance of the "i-ROP" System and Image Features Associated With Expert Diagnosis

scientific article

Consensus Recommendations for a Dynamic Susceptibility Contrast MRI Protocol for Use in High-Grade Gliomas

scientific article published on 09 June 2020

Consensus recommendations for a standardized Brain Tumor Imaging Protocol in clinical trials

scientific article (publication date: September 2015)

Corrigendum to: Accounting for data variability in multi-institutional distributed deep learning for medical imaging

scientific article published on 28 June 2020

Creating a classification of image types in the medical literature for visual categorization

article published in 2012

Dealing with inter-expert variability in retinopathy of prematurity: A machine learning approach

scientific article published on 16 June 2015

Deep Learning for Image Quality Assessment of Fundus Images in Retinopathy of Prematurity

scientific article published on 05 December 2018

DeepNeuro: an open-source deep learning toolbox for neuroimaging

scientific article published on 23 June 2020

Democratizing AI

scientific article published on 16 May 2019

Developing a survey to assess factors that contribute to physician involvement in clinical research

scientific article published on January 2013

Development of a software for quantitative evaluation radiotherapy target and organ-at-risk segmentation comparison

scientific article

Distributed deep learning networks among institutions for medical imaging

scientific article published on 29 March 2018

Effectiveness of Global Features for Automatic Medical Image Classification and Retrieval - the experiences of OHSU at ImageCLEFmed

scientific article

Erratum: Semi-automated pulmonary nodule interval segmentation using the NLST data

scholarly article

Evaluating Multisite rCBV Consistency from DSC-MRI Imaging Protocols and Postprocessing Software Across the NCI Quantitative Imaging Network Sites Using a Digital Reference Object (DRO)

scientific article published on 01 March 2019

Evaluating performance of biomedical image retrieval systems--an overview of the medical image retrieval task at ImageCLEF 2004-2013

scientific article

Evaluating the Use of rCBV as a Tumor Grade and Treatment Response Classifier Across NCI Quantitative Imaging Network Sites: Part II of the DSC-MRI Digital Reference Object (DRO) Challenge

scientific article published on 01 June 2020

Evaluation of Simulated Lesions as Surrogates to Clinical Lesions for Thoracic CT Volumetry: The Results of an International Challenge

scientific article published on 12 September 2018

Evaluation of a deep learning image assessment system for detecting severe retinopathy of prematurity

scientific article published on 23 November 2018

Evaluation of artificial intelligence-based telemedicine screening for retinopathy of prematurity

scientific article published on 11 April 2020

Exercise-induced calf muscle hyperemia: Rapid mapping of magnetic resonance imaging using deep learning approach

scientific article published on 01 August 2020

Expert Diagnosis of Plus Disease in Retinopathy of Prematurity From Computer-Based Image Analysis.

scientific article published on 14 April 2016

Field of View Normalization in Multi-Site Brain MRI.

scientific article published on 20 January 2018

Head and neck cancer patient images for determining auto-segmentation accuracy in T2-weighted magnetic resonance imaging through expert manual segmentations

scientific article published on 01 June 2020

INCREASED PERFUSION DUE TO VASCULAR NORMALIZATION IMPROVES OXYGENATION AND SURVIVAL IN GLIOBLASTOMA PATIENTS TREATED WITH CEDIRANIB WITH OR WITHOUT CHEMORADIATION.

scientific article published in July 2014

ISLES 2016 and 2017-Benchmarking Ischemic Stroke Lesion Outcome Prediction Based on Multispectral MRI

scientific article published on 13 September 2018

Implementation and Validation of a Three-dimensional Cardiac Motion Estimation Network

scientific article published on 17 July 2019

Improved tumor oxygenation and survival in glioblastoma patients who show increased blood perfusion after cediranib and chemoradiation.

scientific article

Improvement and Multi-Population Generalizability of a Deep Learning-Based Chest Radiograph Severity Score for COVID-19

scientific article published on 18 September 2020

Improving Automated Pediatric Bone Age Estimation Using Ensembles of Models from the 2017 RSNA Machine Learning Challenge

scientific article published on 20 November 2019

Individualized estimation of conditional survival for patients with head and neck cancer.

scientific article

Intravoxel incoherent motion imaging kinetics during chemoradiotherapy for human papillomavirus-associated squamous cell carcinoma of the oropharynx: preliminary results from a prospective pilot study.

scientific article

Introduction to Machine Learning, Neural Networks, and Deep Learning

scientific article published on 27 February 2020

Kinetic Analysis of Lesions Identified on a Rapid Abridged Multiphase (RAMP) Breast MRI Protocol

scientific article published on 27 May 2019

Level Sets for Retinal Vasculature Segmentation Using Seeds from Ridges and Edges from Phase Maps.

scientific article published on January 2012

Low incidence of pseudoprogression by imaging in newly diagnosed glioblastoma patients treated with cediranib in combination with chemoradiation

scientific article

MRI Based Bayesian Personalization of a Tumor Growth Model.

scientific article

MRI Simulation Study Investigating Effects of Vessel Topology, Diffusion, and Susceptibility on Transverse Relaxation Rates Using a Cylinder Fork Model.

scientific article published on 24 November 2017

Machine Learning Has Arrived!

scientific article published in December 2017

Machine Learning Models can Detect Aneurysm Rupture and Identify Clinical Features Associated with Rupture

scientific article published on 09 July 2019

Magnetic resonance imaging of swallowing-related structures in nasopharyngeal carcinoma patients receiving IMRT: Longitudinal dose-response characterization of quantitative signal kinetics

scientific article published on 28 January 2016

Methods for Segmentation and Classification of Digital Microscopy Tissue Images

Monitoring Disease Progression With a Quantitative Severity Scale for Retinopathy of Prematurity Using Deep Learning

scientific article published on 03 July 2019

Multi-Institutional Assessment and Crowdsourcing Evaluation of Deep Learning for Automated Classification of Breast Density

scientific article published on 24 June 2020

Multimodality imaging and mathematical modelling of drug delivery to glioblastomas

scientific article published on October 2016

Multisite Concordance of DSC-MRI Analysis for Brain Tumors: Results of a National Cancer Institute Quantitative Imaging Network Collaborative Project.

scientific article

Multisite concordance of apparent diffusion coefficient measurements across the NCI Quantitative Imaging Network

scientific article published on 10 October 2017

NCOG-04. EFFECTS OF PROTON RADIATION ON BRAIN STRUCTURE AND FUNCTION IN LOW GRADE GLIOMA

scientific article published on 5 November 2018

NIMG-09. CHARACTERIZING GLIOMA MICROENVIRONMENT WITH ULTRA-HIGH GRADIENT DIFFUSION MRI

NIMG-29RADIOLABELED TEMOZOLOMIDE CAN MEASURE BEVACIZUMAB INDUCED VASCULAR MODULATION IN PATIENTS WITH RECURRENT GBM.

scientific article

NIMG-63. ADVANCED IMAGING FOR ASSESSING VOLUMETRIC RESPONSES IN BRAIN METASTASES TREATED WITH CHECKPOINT BLOCKADE

scientific article published on 5 November 2018

NIMG-68. MRI CHANGES IN NEWLY DIAGNOSED GLIOBLASTOMA PATIENTS TREATED AS PART OF A PHASE II TRIAL WITH BAVITUXIMAB, RADIATION, AND TEMOZOLOMIDE

NIMG-85. PBR28 PET-MRI IN GBM PATIENTS TREATED WITH IMMUNOTHERAPY OR SUSPECTED PSUEDOPROGRESSION

Nomogram for predicting the benefit of adjuvant chemoradiotherapy for resected gallbladder cancer.

scientific article published on 7 November 2011

Observer and feature analysis on diagnosis of retinopathy of prematurity

scientific article published on January 2012

Overview of the ImageCLEFmed 2008 Medical Image Retrieval Task

article

PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images

scientific article published on 01 October 2018

Parametric survival models for predicting the benefit of adjuvant chemoradiotherapy in gallbladder cancer ⬇️

scientific article published on November 13, 2010

Personalized Radiotherapy Planning Based on a Computational Tumor Growth Model.

scientific article published on 8 November 2016

Phase II study of tivozanib, an oral VEGFR inhibitor, in patients with recurrent glioblastoma.

scientific article published on 16 November 2016

Plus Disease in Retinopathy of Prematurity: A Continuous Spectrum of Vascular Abnormality as a Basis of Diagnostic Variability

scientific article published on 30 August 2016

Plus Disease in Retinopathy of Prematurity: Convolutional Neural Network Performance Using a Combined Neural Network and Feature Extraction Approach

scientific article published on 14 February 2020

Plus Disease in Retinopathy of Prematurity: Diagnostic Trends in 2016 Versus 2007.

scientific article published on 10 January 2017

Plus Disease in Retinopathy of Prematurity: Improving Diagnosis by Ranking Disease Severity and Using Quantitative Image Analysis

scientific article published on 24 August 2016

Plus disease diagnosis in retinopathy of prematurity: vascular tortuosity as a function of distance from optic disk

scientific article published on September 2013

Principal curve based semi-automatic segmentation of organs in 3D-CT.

scientific article published on January 2011

Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI

scientific article published in Scientific Reports

Prognostic value of pretherapy platelet elevation in oropharyngeal cancer patients treated with chemoradiation

scientific article published on 28 September 2015

Prospective assessment of an atlas-based intervention combined with real-time software feedback in contouring lymph node levels and organs-at-risk in the head and neck: Quantitative assessment of conformance to expert delineation

scientific article published on 21 December 2012

Publisher Correction: Probing tumor microenvironment in patients with newly diagnosed glioblastoma during chemoradiation and adjuvant temozolomide with functional MRI

scientific article published on 14 June 2019

Quality assurance assessment of diagnostic and radiation therapy-simulation CT image registration for head and neck radiation therapy: anatomic region of interest-based comparison of rigid and deformable algorithms

scientific article

Quantitative Imaging Informatics for Cancer Research

scientific article published on 01 May 2020

Quantitative Imaging Network: Data Sharing and Competitive AlgorithmValidation Leveraging The Cancer Imaging Archive

scientific article (publication date: February 2014)

Quantitative Imaging in Cancer Clinical Trials

scientific article

Quantitative assessment of target delineation variability for thymic cancers: Agreement evaluation of a prospective segmentation challenge

scientific article

Quantitative imaging biomarkers: a review of statistical methods for computer algorithm comparisons

scientific article

Radiomics in Brain Tumor: Image Assessment, Quantitative Feature Descriptors, and Machine-Learning Approaches.

scientific article published on 5 October 2017

Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features.

scientific article published on December 2016

Real world variability in plus disease identified using a deep learning-based retinopathy of prematurity severity scale

scientific article published on 04 May 2020

Reliable estimation of microvascular flow patterns in patients with disrupted blood-brain barrier using dynamic susceptibility contrast MRI.

scientific article published on 30 November 2016

Repeatability of Cerebral Perfusion Using Dynamic Susceptibility Contrast MRI in Glioblastoma Patients

scientific article published on June 2015

Repeatability of Standardized and Normalized Relative CBV in Patients with Newly Diagnosed Glioblastoma.

scientific article

Reply

scientific article published on 19 October 2018

Residual Convolutional Neural Network for Determination of IDH Status in Low- and High-grade Gliomas from MR Imaging

scientific article published on 22 November 2017

Retrieving similar cases from the medical literature - the ImageCLEF experience.

scientific article

SPIE-AAPM-NCI BreastPathQ challenge: an image analysis challenge for quantitative tumor cellularity assessment in breast cancer histology images following neoadjuvant treatment

scientific article published on 08 May 2021

Segmentation and Classification in Digital Pathology for Glioma Research: Challenges and Deep Learning Approaches

scientific article published on 21 February 2020

Semi-Automated Pulmonary Nodule Interval Segmentation using the NLST data.

scientific article published on 24 January 2018

Siamese neural networks for continuous disease severity evaluation and change detection in medical imaging

scientific article published on 26 March 2020

Standard chemoradiation for glioblastoma results in progressive brain volume loss

scientific article

Standard chemoradiation in combination with VEGF targeted therapy for glioblastoma results in progressive gray and white matter volume loss

scientific article published on 5 January 2018

Statistical issues in the comparison of quantitative imaging biomarker algorithms using pulmonary nodule volume as an example.

scientific article

Structure-based level set method for automatic retinal vasculature segmentation

Survival prediction models for estimating the benefit of post-operative radiation therapy for gallbladder cancer and lung cancer

scientific article

Target Contour Testing/Instructional Computer Software (TaCTICS): A Novel Training and Evaluation Platform for Radiotherapy Target Delineation ⬇️

scientific article published on November 13, 2010

The ImageCLEF Medical Retrieval Task at ICPR 2010 – Information Fusion

The ImageCLEF Medical Retrieval Task at ICPR 2010 — Information Fusion to Combine Visual and Textual Information

The ImageCLEFmed medical image retrieval task test collection.

scientific article

The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge

scientific article

The Impact of Arterial Input Function Determination Variations on Prostate Dynamic Contrast-Enhanced Magnetic Resonance Imaging Pharmacokinetic Modeling: A Multicenter Data Analysis Challenge, Part II

scientific article published on 01 March 2019

The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)

scientific article

The RSNA International COVID-19 Open Annotated Radiology Database (RICORD)

scientific article published on 05 January 2021

The RSNA Pediatric Bone Age Machine Learning Challenge

scientific article published on 27 November 2018

Toward a severity index for ROP: An unsupervised approach

scientific article

Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research

scientific article

Using medline queries to generate image retrieval tasks for benchmarking.

scientific article published in January 2008

Variations of dynamic contrast-enhanced magnetic resonance imaging in evaluation of breast cancer therapy response: a multicenter data analysis challenge

scientific article

Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer

scientific article (publication date: 2014)

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