Search filters

List of works by Anne Cori

A New Method for Estimating the Coverage of Mass Vaccination Campaigns Against Poliomyelitis From Surveillance Data.

scientific article

A generic method and software to estimate the transmission advantage of pathogen variants in real-time : SARS-CoV-2 as a case-study

scientific article published on 28 November 2021

A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies

A new framework and software to estimate time-varying reproduction numbers during epidemics

scientific article published on 15 September 2013

A quantitative framework to define the end of an outbreak: application to Ebola Virus Disease

scientific article published on 20 February 2020

A simple approach to measure transmissibility and forecast incidence

scientific article published on 24 February 2017

Aetiology of vaginal discharge, urethral discharge, and genital ulcer in sub-Saharan Africa: A systematic review and meta-regression

scientific article published in May 2024

Aetiology of vaginal discharge, urethral discharge, and genital ulcer in sub-Saharan Africa: systematic review and meta-regression

scientific article published on 9 November 2023

After Ebola in West Africa — Unpredictable Risks, Preventable Epidemics

scientific article (publication date: 11 August 2016)

Age distribution of cases and deaths during the 1889 influenza pandemic

scientific article

Assessment of epidemic projections using recent HIV survey data in South Africa: a validation analysis of ten mathematical models of HIV epidemiology in the antiretroviral therapy era.

scientific article published in October 2015

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

scientific article

CD4+ cell dynamics in untreated HIV-1 infection: overall rates, and effects of age, viral load, sex and calendar time

scientific article published in November 2015

Comparing human and model-based forecasts of COVID-19 in Germany and Poland

scientific article published on 19 September 2022

Comparing human and model-based forecasts of COVID-19 in Germany and Poland

scientific article published on 5 December 2021

Differences in health-related quality of life between HIV-positive and HIV-negative people in Zambia and South Africa: a cross-sectional baseline survey of the HPTN 071 (PopART) trial

scientific article published on 27 September 2017

Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis

scientific article

Ebola Virus Disease among Male and Female Persons in West Africa

scientific article published on January 2016

Ebola virus disease among children in West Africa

scientific article

Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections

scientific article

Estimates of the severity of COVID-19 disease

scholarly article by Gemma Nedjati-Gilani published in 2020

Estimates of the severity of coronavirus disease 2019: a model-based analysis

scientific article published on 30 March 2020

Estimating HIV incidence from case-report data: method and an application in Colombia

scientific article

Estimating influenza latency and infectious period durations using viral excretion data

scientific article

Estimating the epidemic reproduction number from temporally aggregated incidence data: a statistical modelling approach and software tool

scientific article published on 13 December 2022

Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study

scientific article published in July 2016

Evolution of HIV virulence in response to widespread scale up of antiretroviral therapy: a modeling study

scientific article published on 21 February 2016

Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study

scientific article

Gaps in mobility data and implications for modelling epidemic spread: a scoping review and simulation study

scientific article published on 10 March 2022

Genetic evidence for the association between COVID-19 epidemic severity and timing of non-pharmaceutical interventions

scientific article published on 12 April 2021

Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting

scientific article published on 9 December 2014

HIV treatment-as-prevention research: taking the right road at the crossroads

scientific article

HPTN 071 (PopART): a cluster-randomized trial of the population impact of an HIV combination prevention intervention including universal testing and treatment: mathematical model

scientific article published on 15 January 2014

Health benefits, costs, and cost-effectiveness of earlier eligibility for adult antiretroviral therapy and expanded treatment coverage: a combined analysis of 12 mathematical models

scientific article published in December 2013

Heterogeneities in the case fatality ratio in the West African Ebola outbreak 2013–2016

scientific article (publication date: 10 April 2017)

How Can Viral Dynamics Models Inform Endpoint Measures in Clinical Trials of Therapies for Acute Viral Infections?

scientific article

Impact and Cost-Effectiveness of Point-Of-Care CD4 Testing on the HIV Epidemic in South Africa

scientific article published on 8 July 2016

Inference of epidemic dynamics in the COVID-19 era and beyond

scientific article published in September 2024

Inference of epidemic dynamics in the COVID-19 era and beyond

scientific article published on 29 March 2024

Inference of epidemic dynamics in the COVID-19 era and beyond

scientific article published on 27 March 2024

Inferring the reproduction number using the renewal equation in heterogeneous epidemics

scientific article published on 30 March 2022

International risk of yellow fever spread from the ongoing outbreak in Brazil

article

International risk of yellow fever spread from the ongoing outbreak in Brazil, December 2016 to May 2017.

scientific article

Key data for outbreak evaluation: building on the Ebola experience

scientific article

Of germs and men

scientific article published on 24 February 2016

Outbreak analytics: a developing data science for informing the response to emerging pathogens.

scientific article

Outbreak of Ebola virus disease in the Democratic Republic of the Congo, April–May, 2018: an epidemiological study

scientific article published in The Lancet

OutbreakTools: a new platform for disease outbreak analysis using the R software

scientific article (publication date: June 2014)

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

scientific article published on 07 October 2016

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial

scientific article published in September 2021

PopART-IBM, a highly efficient stochastic individual-based simulation model of generalised HIV epidemics developed in the context of the HPTN 071 (PopART) trial

preprint

Potential Biases in Estimating Absolute and Relative Case-Fatality Risks during Outbreaks

scientific article

Reconstructing transmission chains of SARS-CoV-2 amid multiple outbreaks in a geriatric acute-care hospital

scientific article published on 10 January 2022

Reduction in mobility and COVID-19 transmission

scholarly article by Pierre Nouvellet published in 2021

Scoring epidemiological forecasts on transformed scales

scientific article published on 24 January 2023

Sorting out assortativity: when can we assess the contributions of different population groups to epidemic transmission?

scientific article published on 15 March 2024

Temporal variability and social heterogeneity in disease transmission: the case of SARS in Hong Kong

scientific article

Temporal variations in international air travel: implications for modelling the spread of infectious diseases

scientific article published on 3 June 2024

Temporal variations in international air travel: implications for modelling the spread of infectious diseases

scientific article published on 13 February 2024

The Incidence Patterns Model to Estimate the Distribution of New HIV Infections in Sub-Saharan Africa: Development and Validation of a Mathematical Model

scientific article published in September 2016

The potential effects of changing HIV treatment policy on tuberculosis outcomes in South Africa: results from three tuberculosis-HIV transmission models.

scientific article

The role of rapid diagnostics in managing Ebola epidemics

scientific article published on December 2015

Transmissibility and geographic spread of the 1889 influenza pandemic

scientific article

Transmission parameters of the A/H1N1 (2009) influenza virus pandemic: a review

scientific article

Unraveling the drivers of MERS-CoV transmission

scientific article published on 25 July 2016

West African Ebola epidemic after one year--slowing but not yet under control

scientific article

When are pathogen genome sequences informative of transmission events?

scientific article published on 8 February 2018

When is the R = 1 epidemic threshold meaningful?

scientific article published in November 2024

outbreaker2: a modular platform for outbreak reconstruction

scholarly article by Finlay Campbell published in October 2018

Paulina is supported by:

About Paulina

Help