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List of works by Louis du Plessis

A computationally tractable birth-death model that combines phylogenetic and epidemiological data

scientific article published on 11 February 2022

A depauperate immune repertoire precedes evolution of sociality in bees

scientific article published on 24 April 2015

Ancient Bacterial Genomes Reveal a High Diversity of Treponema pallidum Strains in Early Modern Europe

scientific article published on 07 August 2020

Ancient chicken remains reveal the origins of virulence in Marek’s disease virus

scientific article published on 14 December 2023

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

scientific article published on 08 April 2019

COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses

scientific article published on 07 November 2024

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework

scientific article published on 06 November 2020

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK

scientific article published on 08 January 2021

Evolution and epidemic spread of SARS-CoV-2 in Brazil

scientific article published on 23 July 2020

Evolution and epidemic spread of SARS-CoV-2 in Brazil

preprint article published on 12 June 2020

Gene expression differences underlying genotype-by-genotype specificity in a host-parasite system

scientific article published on 18 February 2014

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

scientific article published on 24 May 2018

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018

scientific article published on 07 August 2020

Genomic and epidemiological monitoring of yellow fever virus transmission potential

scientific article published in Science

Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

scientific article published on 08 February 2022

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California ⬇️

scientific article published on 08 June 2020

Impact of the tree prior on estimating clock rates during epidemic outbreaks

scientific article published on 2 April 2018

Insights into the early epidemic spread of ebola in sierra leone provided by viral sequence data

scientific article

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

scientific article published on 07 January 2022

Taming the BEAST - A community teaching material resource for BEAST 2.

scientific article

The changing epidemiological profile of HIV-1 subtype B epidemic in Ukraine

article

The effect of human mobility and control measures on the COVID-19 epidemic in China

scientific article (preprint)

The effect of human mobility and control measures on the COVID-19 epidemic in China

scientific article

The genomes of Crithidia bombi and C. expoeki, common parasites of bumblebees.

scientific article

The genomes of two key bumblebee species with primitive eusocial organization ⬇️

scientific article

The what, where, how and why of gene ontology--a primer for bioinformaticians

scientific article

Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology

article

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