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List of works by Alex Mitchell

A human gut bacterial genome and culture collection for improved metagenomic analyses

scientific article published on 04 February 2019

A new genomic blueprint of the human gut microbiota

scientific article published on 11 February 2019

Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments

scientific article

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina

scientific article

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.

scientific article published on 23 October 2017

EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data

scientific article

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data

scientific article

ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services

scientific article published on 23 January 2017

GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations

scientific article published on 19 March 2016

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

scientific article

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes

scientific article published on 17 November 2015

InterPro in 2011: new developments in the family and domain prediction database

scientific article

InterPro in 2017-beyond protein family and domain annotations

scientific article

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

article by Alex Mitchell et al published 6 November 2018 in Nucleic Acids Research

InterPro, progress and status in 2005

scientific article

InterPro: the integrative protein signature database

scientific article

InterProScan 5: genome-scale protein function classification

scientific article

Learning to extract relations for protein annotation

scientific article published in July 2007

METIS: multiple extraction techniques for informative sentences.

scientific article

MGnify: the microbiome analysis resource in 2020

scientific article published on 01 January 2020

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

scientific article published on February 2012

Metagenomic analysis: the challenge of the data bonanza

scientific article

Microbial abundance, activity and population genomic profiling with mOTUs2

scientific article published on 4 March 2019

Microbial community drivers of PK/NRP gene diversity in selected global soils

article

Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics

scientific article published on 20 January 2020

New developments in the InterPro database

scientific article published in January 2007

PRINTS and PRINTS-S shed light on protein ancestry

scientific article published on January 2002

The InterPro protein families database: the classification resource after 15 years

scientific article

The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012

scientific article

The metagenomic data life-cycle: standards and best practices.

scientific article

Unifying the known and unknown microbial coding sequence space

scientific article published on 31 March 2022

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