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List of works by Jingyuan Fu

A GWAS meta-analysis suggests roles for xenobiotic metabolism and ion channel activity in the biology of stool frequency

scientific article published on 29 July 2016

A Proinflammatory Gut Microbiota Increases Systemic Inflammation and Accelerates Atherosclerosis

scientific article published on 01 January 2019

A System Biology Perspective on Environment-Host-Microbe Interactions.

scientific article published on 16 April 2018

A liver-specific long noncoding RNA with a role in cell viability is elevated in human nonalcoholic steatohepatitis

scientific article published on 10 January 2017

Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles

scientific article published on 29 October 2018

Analysis of HLA and non-HLA alleles can identify individuals at high risk for celiac disease

scientific article

Analysis of SNPs with an effect on gene expression identifies UBE2L3 and BCL3 as potential new risk genes for Crohn's disease

scientific article

Anti-inflammatory Gut Microbial Pathways Are Decreased During Crohn's Disease Exacerbations

scientific article published on 01 October 2019

Apple or pear: size and shape matter

scientific article published in April 2015

Are hypertriglyceridemia and low HDL causal factors in the development of insulin resistance?

scientific article published on 07 January 2014

Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease

scientific article published on 01 May 2019

Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels

scientific article

Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases

scientific article published on 18 February 2019

Cell Specific eQTL Analysis without Sorting Cells

scientific article published on 8 May 2015

Combining microarrays and genetic analysis

article

Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide association studies

scientific article

Common variants in 22 loci are associated with QRS duration and cardiac ventricular conduction

scientific article

Correlation of genetic risk and messenger RNA expression in a Th17/IL23 pathway analysis in inflammatory bowel disease

scientific article published in May 2014

Defining gene and QTL networks.

scientific article published on 03 February 2009

Detection of stable community structures within gut microbiota co-occurrence networks from different human populations

scientific article published on 7 February 2018

Determining the association between adipokine expression in multiple tissues and phenotypic features of non-alcoholic fatty liver disease in obesity

scientific article

Diversity and Ecology of Caudoviricetes Phages with Genome Terminal Repeats in Fecal Metagenomes from Four Dutch Cohorts

scientific article published in 2022

Dysbiosis of the buccal mucosa microbiome in primary Sjögren's syndrome patients

scientific article published on 01 December 2018

Environment dominates over host genetics in shaping human gut microbiota

scientific article published in Nature

Extraintestinal manifestations and complications in inflammatory bowel disease: from shared genetics to shared biological pathways

scientific article published on June 2014

GWAS as a Driver of Gene Discovery in Cardiometabolic Diseases

scientific article

Genetic and epigenetic regulation of gene expression in fetal and adult human livers

scientific article

Genetical genomics: spotlight on QTL hotspots

scientific article

Genetics of coronary artery disease: genome-wide association studies and beyond

scientific article published on 23 May 2012

Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure

scientific article

Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals

scientific article published on 16 October 2020

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

scientific article published on 08 July 2019

Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity

scientific article published on 11 August 2020

Gut microbiome and lipid metabolism: from associations to mechanisms

scientific article published on 6 April 2016

Gut microbiome structure and metabolic activity in inflammatory bowel disease

scientific article published on 10 December 2018

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome

scientific article published on 01 December 2018

Gut microbiota composition associated with stool consistency.

scientific article published on 14 August 2015

High-throughput proteomic analysis reveals systemic dysregulation in virally suppressed people living with HIV

scientific article published in 2023

Host Genetics and Gut Microbiome: Challenges and Perspectives

scientific article

Human disease-associated genetic variation impacts large intergenic non-coding RNA expression

scientific article

Immunochip meta-analysis in European and Argentinian populations identifies two novel genetic loci associated with celiac disease

scientific article published on 07 October 2019

Integration of epidemiologic, pharmacologic, genetic and gut microbiome data in a drug-metabolite atlas

scientific article published on 13 January 2020

Integrative analyses of genetic variation in enzyme activities of primary carbohydrate metabolism reveal distinct modes of regulation in Arabidopsis thaliana

scientific article published on 18 August 2008

Inter-Tissue Gene Co-Expression Networks between Metabolically Healthy and Unhealthy Obese Individuals

scientific article

Interplay of host genetics and gut microbiota underlying the onset and clinical presentation of inflammatory bowel disease

scientific article published on 8 October 2016

Intestinal microbiome composition and its relation to joint pain and inflammation

scientific article published on 25 October 2019

Lactate Degradation Pattern Shifts in Rumen Acidosis Models

scientific article published on 07 February 2019

Large-scale plasma metabolome analysis reveals alterations in HDL metabolism in migraine

scientific article published on 03 April 2019

Limited evidence for parent-of-origin effects in inflammatory bowel disease associated loci

scientific article

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity ⬇️

scientific article

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity

scientific article published on 01 December 2016

Lipopolysaccharide Lowers Cholesteryl Ester Transfer Protein by Activating F4/80+Clec4f+Vsig4+Ly6C- Kupffer Cell Subsets.

scientific article published on 10 March 2018

Mapping determinants of gene expression plasticity by genetical genomics in C. elegans

scientific article published on 13 November 2006

MetaNetwork: a computational protocol for the genetic study of metabolic networks

scientific article published on 01 January 2007

Multi-ethnic studies in complex traits ⬇️

scientific article published on 02 September 2011

Optimal design and analysis of genetic studies on gene expression.

scientific article published on 15 December 2005

Optimal design of genetic studies of gene expression with two-color microarrays in outbred crosses

scientific article published on 14 September 2008

Pharmacomicrobiomics: a novel route towards personalized medicine?

scientific article

Plasma cholesteryl ester transfer protein is predominantly derived from Kupffer cells

scientific article published on 14 July 2015

Pleiotropic effects of lipid genes on plasma glucose, HbA1c, and HOMA-IR levels

scientific article published on 10 April 2014

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

scientific article

Population-level analysis of gut microbiome variation

scientific article published on 28 April 2016

Proton pump inhibitors affect the gut microbiome

scientific article published on 9 December 2015

Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci.

scholarly article

Role of gut microbiota in chronic low-grade inflammation as potential driver for atherosclerotic cardiovascular disease: a systematic review of human studies

scientific article published on 24 August 2018

SLC39A8 missense variant is associated with Crohn's disease but does not have a major impact on gut microbiome composition in healthy subjects

scientific article published in PLoS ONE

Shared gut, but distinct oral microbiota composition in primary Sjögren's syndrome and systemic lupus erythematosus

article

Structural variation in the gut microbiome associates with host health

scientific article published on 27 March 2019

System-wide molecular evidence for phenotypic buffering in Arabidopsis

article

Systematic analysis of relationships between plasma branched-chain amino acid concentrations and cardiometabolic parameters: an association and Mendelian randomization study

scientific article published in 2022

Systems genetics approach reveals cross-talk between bile acids and intestinal microbes

scientific article published on 29 August 2019

Systems genetics: From GWAS to disease pathways.

scientific article published on 2 May 2014

The Gut Microbiome Composition Is Altered in Long-standing Type 1 Diabetes and Associates With Glycemic Control and Disease-Related Complications

scientific article published in 2022

The Gut Microbiome Contributes to a Substantial Proportion of the Variation in Blood Lipids

scientific article published on 10 September 2015

The effect of host genetics on the gut microbiome

scientific article published on 03 October 2016

The genetics of plant metabolism

article

The genome revolution and its role in understanding complex diseases

scientific article published on 13 May 2014

The immunity-diet-microbiota axis in the development of metabolic syndrome

scientific article

The influence of proton pump inhibitors and other commonly used medication on the gut microbiota.

scientific article published on 24 January 2017

The long-term genetic stability and individual specificity of the human gut microbiome

scientific article published in 2021

The role of the gut microbiome in graft fibrosis after pediatric liver transplantation

scientific article published on 13 September 2020

Three ulcerative colitis susceptibility loci are associated with primary sclerosing cholangitis and indicate a role for IL2, REL, and CARD9

scientific article

Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA

scientific article

Understanding human immune function using the resources from the Human Functional Genomics Project

scientific article published on August 2016

Unraveling the regulatory mechanisms underlying tissue-dependent genetic variation of gene expression

scientific article

designGG: an R-package and web tool for the optimal design of genetical genomics experiments

scientific article

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