List of works - Joanne B. Emerson

Bacterial diversity in the oral cavity of 10 healthy individuals

scientific article

Benchmarking viromics: An in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

article

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

scientific article published on 26 November 2014

Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia

scientific article published on 13 May 2013

Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences

scientific article

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

scientific article

De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape.

scientific article

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.

scientific article published on 29 January 2018

Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly

scientific article

Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales

scientific article published on 13 November 2020

Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation

scientific article published on 25 February 2021

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

scientific article

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

scientific article published on 26 April 2016

High temporal variability in airborne bacterial diversity and abundance inside single-family residences

scientific article published on 15 October 2016

Host-linked soil viral ecology along a permafrost thaw gradient

article

Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood

scientific article published on 13 February 2015

Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus

scientific article published on 13 June 2008

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

scientific article

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem

scientific article published on 28 April 2015

Microbial metagenomics

scientific article

Multiplex quantitative PCR for single-reaction genetically modified (GM) plant detection and identification of false-positive GM plants linked to Cauliflower mosaic virus (CaMV) infection

scientific article published on 07 November 2019

New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake

scientific article

Putative archaeal viruses from the mesopelagic ocean

scientific article published on 15 June 2017

Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems

scientific article published on 16 August 2017

Seasonal Variability of Airborne Particulate Matter and Bacterial Concentrations in Colorado Homes

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.

scientific article

Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere

scientific article

Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.

scientific article

Solutions in microbiome engineering: prioritizing barriers to organism establishment

scientific article published on 21 August 2021

Substantial differences in soil viral community composition within and among four Northern California habitats

scientific article published in 2022

Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains

scientific article (publication date: 15 November 2013)

Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia

scientific article

List of works by Joanne B. Emerson

Bacterial diversity in the oral cavity of 10 healthy individuals

Benchmarking viromics: An in silico evaluation of metagenome-enabled estimates of viral community composition and diversity

Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface

Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia

Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape.

Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface.

Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly

Evidence for non-methanogenic metabolisms in globally distributed archaeal clades basal to the Methanomassiliicoccales

Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

High temporal variability in airborne bacterial diversity and abundance inside single-family residences

Host-linked soil viral ecology along a permafrost thaw gradient

Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood

Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem

Microbial metagenomics

Multiplex quantitative PCR for single-reaction genetically modified (GM) plant detection and identification of false-positive GM plants linked to Cauliflower mosaic virus (CaMV) infection

New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake

Putative archaeal viruses from the mesopelagic ocean

Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems

Seasonal Variability of Airborne Particulate Matter and Bacterial Concentrations in Colorado Homes

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.

Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere

Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.

Solutions in microbiome engineering: prioritizing barriers to organism establishment

Substantial differences in soil viral community composition within and among four Northern California habitats

Utilizing novel diversity estimators to quantify multiple dimensions of microbial biodiversity across domains

Virus-host and CRISPR dynamics in Archaea-dominated hypersaline Lake Tyrrell, Victoria, Australia