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List of works by Mohammed El-Kebir

A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding

article

A hybrid multi-compartment model of granuloma formation and T cell priming in tuberculosis

scientific article published on April 2011

Characterization of SARS-CoV-2 viral diversity within and across hosts

scientific article published on 13 May 2020

Charge Group Partitioning in Biomolecular Simulation

Charge group partitioning in biomolecular simulation

scientific article published on March 2013

Complexity and algorithms for copy-number evolution problems

scientific article

Computational modeling of tuberculous meningitis reveals an important role for tumor necrosis factor-α.

scientific article published on 26 March 2013

Copy-Number Evolution Problems: Complexity and Algorithms

DeCiFering the Elusive Cancer Cell Fraction in Tumor Heterogeneity and Evolution

scientific article published on 27 February 2021

Enumerating common molecular substructures

Inferring the Mutational History of a Tumor Using Multi-state Perfect Phylogeny Mixtures

scientific article published on July 2016

Lagrangian Relaxation Applied to Sparse Global Network Alignment

Mapping proteins in the presence of paralogs using units of coevolution

scientific article

Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples

scientific article published on 13 April 2021

Multiscale computational modeling reveals a critical role for TNF-α receptor 1 dynamics in tuberculosis granuloma formation

scientific article

Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment

NatalieQ: a web server for protein-protein interaction network querying

scientific article

PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors

scientific article published on 01 October 2020

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data

scientific article

SPhyR: tumor phylogeny estimation from single-cell sequencing data under loss and error

scientific article published on 01 September 2018

The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data

scientific article

eXamine: Visualizing annotated networks in Cytoscape.

scientific article published on 30 April 2018

eXamine: exploring annotated modules in networks.

scientific article

metaModules identifies key functional subnetworks in microbiome-related disease

scientific article published on 5 September 2015

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model

scientific article

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