List of works - Tanja Kunej

A Map of the microRNA Regulatory Networks Identified by Experimentally Validated microRNA-Target Interactions in Five Domestic Animals: Cattle, Pig, Sheep, Dog, and Chicken

scientific article published on 05 August 2019

A novel type of sequence variation: multiple-nucleotide length polymorphisms discovered in the bovine genome.

scientific article published on 3 April 2007

An Updated Taxonomy and a Graphical Summary Tool for Optimal Classification and Comprehension of Omics Research

scientific article published on 01 May 2018

Analysis of the CAG repeat number in exon 1 of the androgen receptor gene in Slovene men with idiopathic azoospermia and oligoasthenoteratozoospermia

scientific article published on 01 March 2007

Analysis of the hemochromatosis mutations C282Y and H63D in infertile men

scientific article published on 24 October 2006

Association between the apolipoprotein B signal peptide gene insertion/deletion polymorphism and male infertility

scientific article published on 27 October 2006

Association of Peroxisome Proliferator-Activated Receptors (PPARs) with Diabetic Retinopathy in Human and Animal Models: Analysis of the Literature and Genome Browsers

scientific article published on 03 March 2020

Asthma MicroRNA Regulome Development Using Validated miRNA-Target Interaction Visualization

scientific article published on 20 August 2018

CTG amplification in the DM1PK gene is not associated with idiopathic male subfertility

scientific article published on 29 July 2004

Catalog of MicroRNA Seed Polymorphisms in Vertebrates ⬇️

scientific article published on January 27, 2012

Catalog of genetic variants within mature microRNA seed regions in chicken.

scientific article published on 13 July 2015

Classification of heterogeneous genetic variations of microRNA regulome in cancer.

scientific article published on 15 January 2018

Classification of miRNA-related sequence variations

scientific article published on 23 March 2018

Comparative genomics approach to identify candidate genetic loci for male fertility.

scientific article published on April 2011

Computational identification of non-synonymous polymorphisms within regions corresponding to protein interaction sites.

scientific article published on 4 October 2016

Construction of an integrative regulatory element and variation map of the murine Tst locus.

scientific article

Cross species association examination of UCN3 and CRHR2 as potential pharmacological targets for antiobesity drugs

scientific article

Cross talk between microRNA and coding cancer genes.

scientific article

Database of cattle candidate genes and genetic markers for milk production and mastitis.

scientific article published on 08 June 2009

De novo mutations in idiopathic male infertility - a pilot study

scientific article published on 29 August 2020

Determining the Molecular Background of Endometrial Receptivity in Adenomyosis

scientific article published on 11 September 2020

Diagnostic test for Y chromosome microdeletion screening in male infertility

scientific article published on 01 January 2004

Epigenetic regulation of microRNAs in cancer: An integrated review of literature ⬇️

scientific article published on March 21, 2011

FTO gene variants are associated with growth and carcass traits in cattle.

scientific article published on 28 December 2015

Functional UQCRC1 polymorphisms affect promoter activity and body lipid accumulation

scientific article published on 01 December 2007

GenProBiS: web server for mapping of sequence variants to protein binding sites.

scientific article published on 11 May 2017

Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization.

scientific article

Genetic variability of hypoxia-inducible factor alpha (HIFA) genes in familial erythrocytosis: Analysis of the literature and genome databases

scientific article published on 23 August 2019

Genetic variability of microRNA regulome in human.

scientific article published on 15 September 2014

Genetic variability of serotonin pathway associated with schizophrenia onset, progression, and treatment

scientific article published on 31 October 2019

Genetic variants of erythropoietin (EPO) and EPO receptor genes in familial erythrocytosis

scientific article published on 03 December 2018

Genome-wide and species-wide in silico screening for intragenic MicroRNAs in human, mouse and chicken

scientific article

Genome-wide in silico screening for microRNA genetic variability in livestock species

scientific article published on 19 July 2013

Genome-wide screening for smallest regions of overlaps in cryptorchidism.

scientific article published on 16 March 2018

Gly482Ser polymorphism of the peroxisome proliferator-activated receptor-gamma coactivator-1 gene might be a risk factor for diabetic retinopathy in Slovene population (Caucasians) with type 2 diabetes and the Pro12Ala polymorphism of the PPARgamma

scientific article published on 01 September 2005

HIF1A gene polymorphisms and human diseases: Graphical review of 97 association studies

scientific article

HINCUTs in cancer: hypoxia-induced noncoding ultraconserved transcripts.

scientific article published on 13 September 2013

Harnessing Omics Big Data in Nine Vertebrate Species by Genome-Wide Prioritization of Sequence Variants with the Highest Predicted Deleterious Effect on Protein Function

scientific article published on 10 May 2018

Identification of Sequence Variants within Experimentally Validated Protein Interaction Sites Provides New Insights into Molecular Mechanisms of Disease Development

scientific article published on 28 April 2017

In silico screening of the chicken genome for overlaps between genomic regions: microRNA genes, coding and non-coding transcriptional units, QTL, and genetic variations.

scientific article

Initiative for standardization of reporting genetics of male infertility

scientific article

Insights from Ion Binding Site Network Analysis into Evolution and Functions of Proteins

scientific article published on 8 February 2018

MicroRNA Polymorphisms in Cancer: A Literature Analysis

scientific article

MicroRNA Silencing by DNA Methylation in Human Cancer: a Literature Analysis.

scientific article published on 20 April 2015

MicroRNA epigenetic signatures in human disease.

scientific article

MicroRNA-Target Interactions Reloaded: Identification of Potentially Functional Sequence Variants Within Validated MicroRNA-Target Interactions

scientific article published on 01 November 2018

Minimal Standards for Reporting microRNA:Target Interactions.

scientific article published on April 2017

Molecular Mechanisms of Syndromic Cryptorchidism: Data Synthesis of 50 Studies and Visualization of Gene-Disease Network.

scientific article published on 26 July 2018

Molecular mechanisms of cryptorchidism development: update of the database, disease comorbidity, and initiative for standardization of reporting in scientific literature

scientific article published on July 2016

Molecular sexing assays in 114 mammalian species: In silico sequence reanalysis and a unified graphical visualization of diagnostic tests

scientific article published on 08 April 2019

Molecular signature of eutopic endometrium in endometriosis based on the multi-omics integrative synthesis

scientific article published on 30 May 2020

Multiomics Data Triangulation for Asthma Candidate Biomarkers and Precision Medicine

scientific article published on 01 June 2018

PPAR𝛾 gene and atherosclerosis: Genetic polymorphisms, epigenetics and therapeutic implications

article

Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies

scientific article

Polymorphisms in microRNA targets: a source of new molecular markers for male reproduction ⬇️

scientific article published on April 11, 2011

Polymorphisms in the kappa casein (CSN3) gene in horse and comparative analysis of its promoter and coding region.

scientific article published on 26 August 2008

RASopathies: Presentation at the Genome, Interactome, and Phenome Levels.

scientific article published on 21 April 2016

Sarcoidosis Related Novel Candidate Genes Identified by Multi-Omics Integrative Analyses.

scientific article published on 24 April 2018

Syndromic male subfertility: A network view of genome–phenome associations

scientific article published on 26 February 2022

Thanatechnology and the Living Dead: New Concepts in Digital Transformation and Human-Computer Interaction

journal article from 'OMICS: A Journal of Integrative Biology' published in 2021

The decalog of long non-coding RNA involvement in cancer diagnosis and monitoring.

scientific article

To Genotype or Phenotype for Drug and Food Safety? Exiting the Technology Echo Chambers

scientific article published on 23 July 2018

Toward a Taxonomy for Multi-Omics Science? Terminology Development for Whole Genome Study Approaches by Omics Technology and Hierarchy

scientific article published on January 2017

Transcription factor HIF1A: downstream targets, associated pathways, polymorphic hypoxia response element (HRE) sites, and initiative for standardization of reporting in scientific literature.

scientific article published on 19 September 2016

Vascular endothelial growth factor (VEGF)-related polymorphisms rs10738760 and rs6921438 are not risk factors for proliferative diabetic retinopathy (PDR) in patients with type 2 diabetes mellitus (T2DM)

scientific article published on 12 February 2019

Y chromosome microdeletions in infertile men with cryptorchidism.

scientific article

List of works by Tanja Kunej

A Map of the microRNA Regulatory Networks Identified by Experimentally Validated microRNA-Target Interactions in Five Domestic Animals: Cattle, Pig, Sheep, Dog, and Chicken

A novel type of sequence variation: multiple-nucleotide length polymorphisms discovered in the bovine genome.

An Updated Taxonomy and a Graphical Summary Tool for Optimal Classification and Comprehension of Omics Research

Analysis of the CAG repeat number in exon 1 of the androgen receptor gene in Slovene men with idiopathic azoospermia and oligoasthenoteratozoospermia

Analysis of the hemochromatosis mutations C282Y and H63D in infertile men

Association between the apolipoprotein B signal peptide gene insertion/deletion polymorphism and male infertility

Association of Peroxisome Proliferator-Activated Receptors (PPARs) with Diabetic Retinopathy in Human and Animal Models: Analysis of the Literature and Genome Browsers

Asthma MicroRNA Regulome Development Using Validated miRNA-Target Interaction Visualization

CTG amplification in the DM1PK gene is not associated with idiopathic male subfertility

Catalog of MicroRNA Seed Polymorphisms in Vertebrates ⬇️

Catalog of genetic variants within mature microRNA seed regions in chicken.

Classification of heterogeneous genetic variations of microRNA regulome in cancer.

Classification of miRNA-related sequence variations

Comparative genomics approach to identify candidate genetic loci for male fertility.

Computational identification of non-synonymous polymorphisms within regions corresponding to protein interaction sites.

Construction of an integrative regulatory element and variation map of the murine Tst locus.

Cross species association examination of UCN3 and CRHR2 as potential pharmacological targets for antiobesity drugs

Cross talk between microRNA and coding cancer genes.

Database of cattle candidate genes and genetic markers for milk production and mastitis.

De novo mutations in idiopathic male infertility - a pilot study

Determining the Molecular Background of Endometrial Receptivity in Adenomyosis

Diagnostic test for Y chromosome microdeletion screening in male infertility

Epigenetic regulation of microRNAs in cancer: An integrated review of literature ⬇️

FTO gene variants are associated with growth and carcass traits in cattle.

Functional UQCRC1 polymorphisms affect promoter activity and body lipid accumulation

GenProBiS: web server for mapping of sequence variants to protein binding sites.

Genetic sex determination assays in 53 mammalian species: Literature analysis and guidelines for reporting standardization.

Genetic variability of hypoxia-inducible factor alpha (HIFA) genes in familial erythrocytosis: Analysis of the literature and genome databases

Genetic variability of microRNA regulome in human.

Genetic variability of serotonin pathway associated with schizophrenia onset, progression, and treatment

Genetic variants of erythropoietin (EPO) and EPO receptor genes in familial erythrocytosis

Genome-wide and species-wide in silico screening for intragenic MicroRNAs in human, mouse and chicken

Genome-wide in silico screening for microRNA genetic variability in livestock species

Genome-wide screening for smallest regions of overlaps in cryptorchidism.

Gly482Ser polymorphism of the peroxisome proliferator-activated receptor-gamma coactivator-1 gene might be a risk factor for diabetic retinopathy in Slovene population (Caucasians) with type 2 diabetes and the Pro12Ala polymorphism of the PPARgamma

HIF1A gene polymorphisms and human diseases: Graphical review of 97 association studies

HINCUTs in cancer: hypoxia-induced noncoding ultraconserved transcripts.

Harnessing Omics Big Data in Nine Vertebrate Species by Genome-Wide Prioritization of Sequence Variants with the Highest Predicted Deleterious Effect on Protein Function

Identification of Sequence Variants within Experimentally Validated Protein Interaction Sites Provides New Insights into Molecular Mechanisms of Disease Development

In silico screening of the chicken genome for overlaps between genomic regions: microRNA genes, coding and non-coding transcriptional units, QTL, and genetic variations.

Initiative for standardization of reporting genetics of male infertility

Insights from Ion Binding Site Network Analysis into Evolution and Functions of Proteins

MicroRNA Polymorphisms in Cancer: A Literature Analysis

MicroRNA Silencing by DNA Methylation in Human Cancer: a Literature Analysis.

MicroRNA epigenetic signatures in human disease.

MicroRNA-Target Interactions Reloaded: Identification of Potentially Functional Sequence Variants Within Validated MicroRNA-Target Interactions

Minimal Standards for Reporting microRNA:Target Interactions.

Molecular Mechanisms of Syndromic Cryptorchidism: Data Synthesis of 50 Studies and Visualization of Gene-Disease Network.

Molecular mechanisms of cryptorchidism development: update of the database, disease comorbidity, and initiative for standardization of reporting in scientific literature

Molecular sexing assays in 114 mammalian species: In silico sequence reanalysis and a unified graphical visualization of diagnostic tests

Molecular signature of eutopic endometrium in endometriosis based on the multi-omics integrative synthesis

Multiomics Data Triangulation for Asthma Candidate Biomarkers and Precision Medicine

PPAR𝛾 gene and atherosclerosis: Genetic polymorphisms, epigenetics and therapeutic implications

Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies

Polymorphisms in microRNA targets: a source of new molecular markers for male reproduction ⬇️

Polymorphisms in the kappa casein (CSN3) gene in horse and comparative analysis of its promoter and coding region.

RASopathies: Presentation at the Genome, Interactome, and Phenome Levels.

Sarcoidosis Related Novel Candidate Genes Identified by Multi-Omics Integrative Analyses.

Syndromic male subfertility: A network view of genome–phenome associations

Thanatechnology and the Living Dead: New Concepts in Digital Transformation and Human-Computer Interaction

The decalog of long non-coding RNA involvement in cancer diagnosis and monitoring.

To Genotype or Phenotype for Drug and Food Safety? Exiting the Technology Echo Chambers

Toward a Taxonomy for Multi-Omics Science? Terminology Development for Whole Genome Study Approaches by Omics Technology and Hierarchy

Transcription factor HIF1A: downstream targets, associated pathways, polymorphic hypoxia response element (HRE) sites, and initiative for standardization of reporting in scientific literature.

Vascular endothelial growth factor (VEGF)-related polymorphisms rs10738760 and rs6921438 are not risk factors for proliferative diabetic retinopathy (PDR) in patients with type 2 diabetes mellitus (T2DM)

Y chromosome microdeletions in infertile men with cryptorchidism.