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List of works by Zichen Wang

An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin.

scientific article published on 5 August 2015

An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

scientific article

Analysis of hospitalized COVID-19 patients in the Mount Sinai Health System using electronic medical records (EMR) reveals important prognostic factors for improved clinical outcomes

scientific article published on 04 May 2020

Brain microstructural injury occurs in patients with RRMS despite 'no evidence of disease activity'.

scientific article published on 16 March 2018

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

scientific article published on 01 July 2019

Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling.

scientific article published on 30 October 2017

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

scientific article published on 27 February 2018

Dermal sheath contraction powers stem cell niche relocation during hair cycle regression

scientific article published on 19 December 2019

Differential cytokine contributions of perivascular haematopoietic stem cell niches

scientific article published on 20 February 2017

Drug Gene Budger (DGB): an application for ranking drugs to modulate a specific gene based on transcriptomic signatures

article

Drug-induced adverse events prediction with the LINCS L1000 data

scientific article

Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets

scientific article

Dynamic phosphorylation of CENP-A at Ser68 orchestrates its cell-cycle-dependent deposition at centromeres

scientific article published on 31 December 2014

Dynamics of the discovery process of protein-protein interactions from low content studies

scientific article

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

scientific article

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

scientific article

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.

scientific article published on 26 September 2016

Glucocorticoid receptor isoforms direct distinct mitochondrial programs to regulate ATP production ⬇️

scientific article

GraphStorm: All-in-one Graph Machine Learning Framework for Industry Applications

scientific article published on 25 August 2024

Histone H3.3 and its proteolytically processed form drive a cellular senescence programme

scientific article

Hospitalised COVID-19 patients of the Mount Sinai Health System: a retrospective observational study using the electronic medical records

scientific article published on 26 October 2020

Integrative Analysis of Sex-Specific microRNA Networks Following Stress in Mouse Nucleus Accumbens

scientific article published on 23 December 2016

Integrative radiogenomic analysis for multicentric radiophenotype in glioblastoma

scientific article

L1000CDS2: LINCS L1000 characteristic direction signatures search engine

scientific article

L1000FWD: Fireworks visualization of drug-induced transcriptomic signatures.

scientific article published on 6 February 2018

Lean Big Data integration in systems biology and systems pharmacology

scientific article

Mining data and metadata from the gene expression omnibus

article

Podocyte-Specific Induction of Krüppel-Like Factor 15 Restores Differentiation Markers and Attenuates Kidney Injury in Proteinuric Kidney Disease

Polycomb repressive complex 2 (PRC2) silences genes responsible for neurodegeneration

scientific article published on 15 August 2016

Predicting age by mining electronic medical records with deep learning characterizes differences between chronological and physiological age.

scientific article published on 4 November 2017

Publisher’s Note:Abstraction for data integration:Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction

scientific article

Reprint of "Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction".

scientific article

SIRT6 haploinsufficiency induces BRAF melanoma cell resistance to MAPK inhibitors via IGF signalling

scientific article published in Nature Communications

Single-cell immune landscape of human atherosclerotic plaques

scientific article published on 07 October 2019

Systems Analysis Implicates WAVE2 Complex in the Pathogenesis of Developmental Left-Sided Obstructive Heart Defects

scientific article published on 08 April 2020

Temporal proteomic profiling of postnatal human cortical development

scientific article published on 05 December 2018

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations

scientific article published on 24 November 2017

The Signaling Pathways Project, an integrated 'omics knowledgebase for mammalian cellular signaling pathways

scientific article published on 31 October 2019

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

scientific article published on 03 July 2016

Transcriptomic analysis uncovers novel synergistic mechanisms in combination therapy for lupus nephritis.

scientific article published in November 2017

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

scientific article published in July 2018

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