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List of works by Janne Soininen

A Global Agenda for Advancing Freshwater Biodiversity Research

scientific article

A Metacommunity Approach to Improve Biological Assessments in Highly Dynamic Freshwater Ecosystems

scientific article published on 22 April 2020

A comparative analysis of metacommunity types in the freshwater realm

scientific article

A flexible framework to assess patterns and drivers of beta diversity across spatial scales

scientific article published on 22 November 2023

A global agenda for advancing freshwater biodiversity research

scientific article published in 2021

A meta-analysis of nestedness and turnover components of beta diversity across organisms and ecosystems

scientific article published in 2017

A metacommunity approach for detecting species influenced by mass effect

scientific article published in 2020

A multivariate analysis of beta diversity across organisms and environments

scientific article

A quantitative analysis of species sorting across organisms and ecosystems

scientific article published in 2014

A quantitative analysis of temporal turnover in aquatic species assemblages across ecosystems

scientific article published on February 2010

Altitude and temperature drive anuran community assembly in a Neotropical mountain region

scientific article published on 05 March 2022

Analysis of nestedness in freshwater assemblages—patterns across species and trophic levels

article published in 2012

Aphanizomenon gracile (Nostocales), a cylindrospermopsin-producing cyanobacterium in Polish lakes

scientific article published on 02 February 2013

Are Bacterio- and Phytoplankton Community Compositions Related in Lakes Differing in Their Cyanobacteria Contribution and Physico-Chemical Properties?

scientific article published on 02 June 2021

Are common species sufficient in describing turnover in aquatic metacommunities along environmental and spatial gradients?

article by Jani Heino & Janne Soininen published 5 October 2010 in Limnology and Oceanography

Are drivers of microbial diatom distributions context dependent in human-impacted and pristine environments?

scientific article published on 12 June 2019

Are higher taxa adequate surrogates for species-level assemblage patterns and species richness in stream organisms?

article

Assembly rules and community models for unicellular organisms: patterns in diatoms of boreal streams

article published in 2005

Beta diversity of diatom species and ecological guilds: Response to environmental and spatial mechanisms along the stream watercourse

Beta diversity of stream diatoms at two hierarchical spatial scales: implications for biomonitoring

Beta diversity of stream insects differs between boreal and subtropical regions, but land use does not generally cause biotic homogenization

scientific article published in 2021

Biodiversity Loss Threatens the Current Functional Similarity of Beta Diversity in Benthic Diatom Communities

scientific article published on 29 August 2020

Bioenergy vs biodiversity: effects of intensive forest biomass removal on stream and riparian communities

article by M. C. Mlambo et al published 5 April 2015 in Forestry

Biogeographical Patterns of Species Richness and Abundance Distribution in Stream Diatoms Are Driven by Climate and Water Chemistry

article

Biotic turnover rates during the Pleistocene-Holocene transition

scholarly article

Calibrating aquatic microfossil proxies with regression-tree ensembles: Cross-validation with modern chironomid and diatom data

scholarly article

Cell size and acid tolerance constrain pond diatom distributions in the subarctic

Climate is an important driver for stream diatom distributions

article published in 2015

Climate mediates continental scale patterns of stream microbial functional diversity

scientific article published on 13 June 2020

Clumpy coexistence in phytoplankton: the role of functional similarity in community assembly

scientific article published on 27 July 2021

Community size affects the signals of selection and ecological drift on biodiversity

Community size can affect the signals of ecological drift and niche selection on biodiversity

scientific article published on 18 February 2020

Context dependency and metacommunity structuring in boreal headwater streams

scientific article published in 2011

Contrasting patterns in elevational diversity between microorganisms and macroorganisms

article published in 2010

Diatom Cooccurrence Shows Less Segregation than Predicted from Niche Modeling

scientific article (publication date: 2016)

Diatom biogeography in freshwaters – new insights from between-region comparisons and the role of unmeasured environmental factors

scientific article published in 2021

Diatom community structure along environmental and spatial gradients in lakes and streams

article

Diatom β‐diversity in streams increases with spatial scale and decreases with nutrient enrichment across regional to sub‐continental scales

Diatoms: unicellular surrogates for macroalgal community structure in streams?

article published in 2008

Disentangling distance decay of similarity from richness gradients: response to Baselga (2007)

article

Disentangling multi-scale environmental effects on stream microbial communities

Disentangling the spatial patterns in community composition of prokaryotic and eukaryotic lake plankton

article

Dispersal traits drive the phylogenetic distance decay of similarity in Neotropical stream metacommunities

scholarly article by Victor S. Saito et al published 12 August 2015 in Journal of Biogeography

Dispersal–niche continuum index: a new quantitative metric for assessing the relative importance of dispersal versus niche processes in community assembly

scientific article published in 2020

Distance decay 2.0 – A global synthesis of taxonomic and functional turnover in ecological communities

scientific article published in 2022

Distance decay of similarity in freshwater communities: do macro- and microorganisms follow the same rules?

scientific article published in 2011

Distance decay of similarity in neotropical diatom communities

scientific article

Distribution of invasive Cylindrospermopsis raciborskii in the East-Central Europe is driven by climatic and local environmental variables.

scientific article published on 9 March 2017

Distribution patterns of epilithic diatoms along climatic, spatial and physicochemical variables in the Baltic Sea

Diversity and distribution across a large environmental and spatial gradient: Evaluating the taxonomic and functional turnover, transitions and environmental drivers of benthic diatom communities

scientific article published on 28 September 2020

Diversity patterns of native and exotic fish species suggest homogenization processes, but partly fail to highlight extinction threats

scientific article

Do spatial patterns of benthic diatom assemblages vary across regions and years?

Does catchment geodiversity foster stream biodiversity?

scientific article

Does trait‐based joint species distribution modelling reveal the signature of competition in stream macroinvertebrate communities?

scientific article

Downstream transport processes modulate the effects of environmental heterogeneity on riverine phytoplankton

scientific article published on 14 November 2019

Ecological processes underlying community assembly of aquatic bacteria and macroinvertebrates under contrasting climates on the Tibetan Plateau

scientific article published on 02 November 2019

Effects of connectivity, dispersal directionality and functional traits on the metacommunity structure of river benthic diatoms

Elements of metacommunity structure and community-environment relationships in stream organisms

Elements of metacommunity structure of diatoms and macroinvertebrates within stream networks differing in environmental heterogeneity

scientific article

Elevational microbial β diversity and community assembly processes in subarctic ponds

scientific article published on 12 August 2023

Elevational patterns and hierarchical determinants of biodiversity across microbial taxonomic scales

scientific article published on 01 January 2019

Embracing mountain microbiome and ecosystem functions under global change

scientific article published on 25 February 2022

Environmental factors related to the occurrence ofCylindrospermopsis raciborskii(Nostocales, Cyanophyta) at the north-eastern limit of its geographical range

Environmental filtering and taxonomic relatedness underlie the species richness–evenness relationship

Exotic species invasions undermine regional functional diversity of freshwater fish ⬇️

scientific article published on 29 November 2019

Expanding the ecological niche approach: Relationships between variability in niche position and species richness

article

Fifteen important questions in the spatial ecology of diatoms

Front Cover

scientific article published on 9 February 2020

Geographical patterns of micro-organismal community structure: are diatoms ubiquitously distributed across boreal streams?

scientific article published in 2010

Global patterns and drivers of species and trait composition in diatoms

article

Habitat species pools for phylogenetic structure in microbes

scientific article

Heterogeneity of benthic diatom communities in different spatial scales and current velocities in a turbid river

High beta diversity of bacteria in the shallow terrestrial subsurface

scientific article

High diatom species turnover in a Baltic Sea rock pool metacommunity

IS TEMPORAL OCCURRENCE OF DIATOMS RELATED TO SPECIES TRAITS, LOCAL ABUNDANCE, AND REGIONAL DISTRIBUTION?(1).

scientific article published on 20 October 2011

Integrating dispersal proxies in ecological and environmental research in the freshwater realm

Is catchment productivity a useful predictor of taxa richness in lake plankton communities?

scientific article

Latitudinal gradients in niche breadth and position—regional patterns in freshwater fish

scientific article published on 15 March 2006

Local and geographical factors jointly drive elevational patterns in three microbial groups across subarctic ponds

scientific article published in 2017

Local and regional drivers of taxonomic homogenization in stream communities along a land use gradient

scientific article published on 24 July 2019

Local environment and connectivity are the main drivers of diatom species composition and trait variation in a set of tropical reservoirs

article

Local environment and space drive multiple facets of stream macroinvertebrate beta diversity

Local eukaryotic and bacterial stream community assembly is shaped by regional land use effects

scientific article published on 26 June 2023

Local-regional diversity relationship varies with spatial scale in lotic diatoms

Long‐term phytoplankton community dynamics in Lake Stechlin (north‐east Germany) under sudden and heavily accelerating eutrophication

scientific article published in 2023

Macroecology of unicellular organisms – patterns and processes ⬇️

scientific article published on November 27, 2011

Making more out of sparse data: hierarchical modeling of species communities ⬇️

scientific article published on February 1, 2011

Metacommunity Structure of Stream Insects across Three Hierarchical Spatial scales

scientific article published on 03 March 2020

Metacommunity ecology meets biogeography: effects of geographical region, spatial dynamics and environmental filtering on community structure in aquatic organisms

scientific article published on 6 October 2016

Metacommunity organisation, spatial extent and dispersal in aquatic systems: patterns, processes and prospects

Nutrient enrichment modifies temperature-biodiversity relationships in large-scale field experiments

scientific article

Observing diatom diversity and community composition along environmental gradients in subarctic mountain ponds

Partial decoupling between exotic fish and habitat constraints remains evident in late invasion stages

Patterns and drivers for benthic algal biomass in sub-Arctic mountain ponds

scientific article published on 20 September 2023

Patterns of elevational beta diversity in micro- and macroorganisms

article

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

scientific article published on 28 February 2013

Phylogenetic clustering increases with elevation for microbes.

scientific article

Phytoplankton community assembly in a large boreal lake - deterministic pathways or chaotic fluctuations?

article

Phytoplankton metacommunity structure in subarctic rock pools

scholarly article by S Meier & Janne Soininen published 29 August 2014 in Aquatic Microbial Ecology

Phytoplankton richness is related to nutrient availability, not to pool size, in a subarctic rock pool system

scholarly article by Janne Soininen & Sandra Meier published 17 July 2014 in Hydrobiologia

Predictability in species distributions: a global analysis across organisms and ecosystems

scientific article published in 2014

Productivity-diversity relationships in lake plankton communities

scientific article

Regional and global elevational patterns of microbial species richness and evenness

article

Regional and local environment drive biogeographic patterns in intertidal microorganisms

scientific article published in 2022

Regional diatom body size distributions in streams: Does size vary along environmental, spatial and diversity gradients?

scientific article published in 2006

Regional occupancy in unicellular eukaryotes: a reflection of niche breadth, habitat availability or size-related dispersal capacity?

article

Relationships between local population persistence, local abundance and regional occupancy of species: distribution patterns of diatoms in boreal streams

article published in 2005

Relative importance of spatial processes and environmental factors in shaping alpine meadow communities

scientific article published in 2011

Sampling effort and information quality provided by rare and common species in estimating assemblage structure

scientific article published in March 2020

Scale dependency of community assembly differs between coastal marine bacteria and fungi

scientific article published on 16 November 2023

Seasonal persistence and stability of diatom communities in rivers: are there habitat specific differences?

Snow information is required in subcontinental scale predictions of mountain plant distributions

scientific article published on 21 May 2021

Spatial structure in ecological communities - a quantitative analysis

scientific article published in 2015

Stochastic species distributions are driven by organism size

scientific article published in March 2013

Stream diatom assemblages as predictors of climate

article published in 2016

Stream diatom biodiversity in islands and continents—A global perspective on effects of area, isolation and environment

scientific article published on 5 October 2022

Stream diatoms exhibit weak niche conservation along global environmental and climatic gradients

scientific article published in 2018

Strong and weak trait–environment associations in subarctic stream diatoms

scientific article published on 22 June 2024

Studying biodiversity–ecosystem function relationships in experimental microcosms among islands

scientific article published in 2022

Subtropical streams harbour higher genus richness and lower abundance of insects compared to boreal streams, but scale matters

Surveying biodiversity in protected and managed areas: Algae, macrophytes and macroinvertebrates in boreal forest streams

scientific article published in 2009

Taxonomic dependency of beta diversity components in benthic communities of bacteria, diatoms and chironomids along a water-depth gradient

scientific article published on 24 June 2020

Temperature drives local contributions to beta diversity in mountain streams: Stochastic and deterministic processes

scientific article published in 2019

Temporal variation in community–environment relationships and stream classifications in benthic diatoms: Implications for bioassessment

Temporal variation in microcystin production byPlanktothrix agardhii(Gomont) Anagnostidis and Komárek (Cyanobacteria, Oscillatoriales) in a temperate lake

scientific article published in 2011

Temporal variation in phytoplankton in two lakes with contrasting disturbance regimes

article

Temporal variation of diatom assemblages in oligotrophic and eutrophic streams

Testing the theory of island biogeography for microorganisms—patterns for spring diatoms

article

The Diversity of Benthic Diatoms Affects Ecosystem Productivity in Heterogeneous Coastal Environments

scientific article published in 2019

The distance decay of similarity in ecological communities

article

The diversity of benthic diatoms affects ecosystem productivity in heterogeneous coastal environments

scientific article published on 08 July 2019

The ecological characteristics of idiosyncratic and nested diatoms

scientific article published on 10 October 2007

The ecology of the invasive cyanobacteriumCylindrospermopsis raciborskii(Nostocales, Cyanophyta) in two hypereutrophic lakes dominated byPlanktothrix agardhii(Oscillatoriales, Cyanophyta)

scientific article published in November 2010

The effect of positive interactions on temporal turnover of community composition along an environmental gradient

scientific article (publication date: 2013)

The effects of local, buffer zone and geographical variables on lake plankton metacommunities

article

The relationship between species richness and evenness: a meta-analysis of studies across aquatic ecosystems

scientific article

The relationships of plant species occupancy to niches and traits vary with spatial scale

scientific article published in 2023

The roles of elevation and local environmental factors as drivers of diatom diversity in subarctic streams

The roles of environment and space in shaping stream diatom communities

The three Rs of river ecosystem resilience: Resources, recruitment, and refugia

Thermal barriers constrain microbial elevational range size via climate variability

scientific article published on 15 June 2017

Toward More Integrated Ecosystem Research in Aquatic and Terrestrial Environments

Towards understanding the abundance of non-pollen palynomorphs: A comparison of fossil algae, algal pigments and seda DNA from temperate lake sediments

article

Traits mediate environmental responses of benthic ciliates in dynamic coastal habitats

scientific article published on 24 May 2024

Tropical stream diatom communities – The importance of headwater streams for regional diversity

scientific article published in 2018

Understanding environmental change through the lens of trait-based, functional and phylogenetic biodiversity in freshwater ecosystems

Unravelling direct and indirect effects of hierarchical factors driving microbial stream communities

article published in 2017

Variation in niche parameters along the diversity gradient of unicellular eukaryote assemblages

scientific article published on 13 December 2006

Variation in stream diatom communities in relation to water quality and catchment variables in a boreal, urbanized region.

scientific article published on 3 June 2015

Warming leads to higher species turnover in a coastal ecosystem

article

Woodland key habitats and stream biodiversity: Does small-scale terrestrial conservation enhance the protection of stream biota?

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