List of works by Vladislav A Petyuk

5'-bis-pyrenylated oligonucleotides displaying excimer fluorescence provide sensitive probes of RNA sequence and structure.

scientific article published on September 2001

A genome-scale map of expression for a mouse brain section obtained using voxelation

scientific article published on 15 May 2007

A method to determine lysine acetylation stoichiometries.

scientific article

A transcriptomic atlas of aged human microglia.

scientific article published on 7 February 2018

An Integrative Analysis of Tumor Proteomic and Phosphoproteomic Profiles to Examine the Relationships Between Kinase Activity and Phosphorylation

scientific article published on 21 June 2019

Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry

scientific article published on October 2008

Antibody-independent targeted quantification of TMPRSS2-ERG fusion protein products in prostate cancer.

scientific article

Author Correction: Informed-Proteomics: open-source software package for top-down proteomics

scientific article published on 01 July 2018

Brain IGFBP-5 modifies the relation of depressive symptoms to decline in cognition in older persons

scientific article published on 08 March 2019

Brain expression of the vascular endothelial growth factor gene family in cognitive aging and alzheimer's disease

scientific article published on 22 July 2019

Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment

scientific article published on February 2006

Characterization of the mouse pancreatic islet proteome and comparative analysis with other mouse tissues

scientific article published on 21 June 2008

Comparative analysis of proteome and transcriptome variation in mouse

scientific article

Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection

scientific article published on 22 August 2013

Comprehensive identification of glycated peptides and their glycation motifs in plasma and erythrocytes of control and diabetic subjects

scientific article

Comprehensive quantitative analysis of ovarian and breast cancer tumor peptidomes.

scientific article

DAnTE: a statistical tool for quantitative analysis of -omics data.

scientific article

Detection of head and neck cancer based on longitudinal changes in serum protein abundance

scientific article published on 12 June 2020

Distinguishing d- and l-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry

scientific article published on 27 June 2017

DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets

scientific article

Dual spatial maps of transcript and protein abundance in the mouse brain

scientific article published on June 2009

Elimination of systematic mass measurement errors in liquid chromatography-mass spectrometry based proteomics using regression models and a priori partial knowledge of the sample content

scientific article published on 29 December 2007

Evaluation of Differential Peptide Loading on Tandem Mass Tag-Based Proteomic and Phosphoproteomic Data Quality

scientific article published on 23 November 2021

Exploratory study reveals far reaching systemic and cellular effects of verapamil treatment in subjects with type 1 diabetes

scientific article published on 03 March 2022

Functional mapping of Cre recombinase by pentapeptide insertional mutagenesis.

scientific article

Genetic risk for Alzheimer's dementia predicts motor deficits through multi-omic systems in older adults

scientific article published on 03 October 2019

Hybridization of antisense oligonucleotides with alpha-sarcin loop region of Escherichia coli 23S rRNA.

scientific article

Hybridization of antisense oligonucleotides with the 3'part of tRNA(Phe).

scientific article

Hypothalamic transcriptomes of 99 mouse strains reveal trans eQTL hotspots, splicing QTLs and novel non-coding genes

scientific article (publication date: 13 September 2016)

Increasing Confidence of LC-MS Identifications by Utilizing Ion Mobility Spectrometry

scientific article

Inferring protein expression changes from mRNA in Alzheimer's dementia using deep neural networks

scientific article published on 03 February 2022

Informed-Proteomics: open-source software package for top-down proteomics.

scientific article published on 07 August 2017

Integrated post-experiment monoisotopic mass refinement: an integrated approach to accurately assign monoisotopic precursor masses to tandem mass spectrometric data

scientific article

Interaction of complementary oligonucleotides with the 3'-end of yeast tRNA(Phe)

scientific article published on 01 June 1999

Invasion of strongly binding oligonucleotides into tRNA structure.

scientific article published on July 2000

Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels

scientific article

LC-MS proteomics analysis of the insulin/IGF-1-deficient Caenorhabditis elegans daf-2(e1370) mutant reveals extensive restructuring of intermediary metabolism

scientific article published on 03 March 2014

Label-free quantitative LC-MS proteomics of Alzheimer's disease and normally aged human brains

scientific article

Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample

scientific article published on January 2009

Lipidomic and proteomic analysis of Caenorhabditis elegans lipid droplets and identification of ACS-4 as a lipid droplet-associated protein

scientific article

Liquid chromatography-mass spectrometry-based quantitative proteomics.

scientific article

Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry

scientific article

Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration

scientific article

Mass spectrometry for translational proteomics: progress and clinical implications

scientific article

Metabolic reprogramming during purine stress in the protozoan pathogen Leishmania donovani

scientific article

Mitochondrial dysfunction, oxidative stress, and apoptosis revealed by proteomic and transcriptomic analyses of the striata in two mouse models of Parkinson's disease

scientific article published in February 2008

Mitochondrial respiratory chain protein co-regulation in the human brain

scientific article published on 30 April 2022

Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response

scientific article

MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis

scientific article

Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells.

scientific article published on 28 February 2018

Neuropathological correlates and genetic architecture of microglial activation in elderly human brain

scientific article published in Nature Communications

Phosphoproteome Analysis Reveals Estrogen-ER Pathway as a Modulator of mTOR Activity Via DEPTOR

scientific article published on 12 June 2019

Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss

scientific article published on 26 April 2021

Reduced insulin/insulin-like growth factor-1 signaling and dietary restriction inhibit translation but preserve muscle mass in Caenorhabditis elegans

scientific article published on 03 September 2013

Region-specific protein abundance changes in the brain of MPTP-induced Parkinson's disease mouse model

scientific article

Reproducibility and Transparency by Design

scientific article published on 04 July 2019

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

scientific article published on 14 December 2015

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

scientific article

STEPS: a grid search methodology for optimized peptide identification filtering of MS/MS database search results

scientific article published on 4 February 2013

Signatures of cysteine oxidation on muscle structural and contractile proteins are associated with physical performance and muscle function in older adults: Study of Muscle, Mobility and Aging (SOMMA)

scientific article published in 2024

Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis

scientific article published on 10 April 2013

Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry

scientific article published on 25 January 2007

The NINDS Parkinson's disease biomarkers program

scientific article published on 7 October 2015

The genetics of circulating BDNF: towards understanding the role of BDNF in brain structure and function in middle and old ages

scientific article published on 28 October 2020

The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation.

scientific article

Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling

scientific article published on 22 May 2013

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