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List of works by Stephen J Bush

A Gene Expression Atlas of the Domestic Water Buffalo (Bubalus bubalis)

scientific article published on 24 July 2019

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

scientific article published on 15 September 2017

ADGRE1 (EMR1, F4/80) Is a Rapidly-Evolving Gene Expressed in Mammalian Monocyte-Macrophages

article

Alternative splicing and the evolution of phenotypic novelty

scientific article published on February 2017

Arginine to Glutamine Variant in Olfactomedin Like 3 () Is a Candidate for Severe Goniodysgenesis and Glaucoma in the Border Collie Dog Breed

article

Arginine to glutamine mutation in olfactomedin-like 3 (OLFML3) is a candidate for severe goniodysgenesis and glaucoma in the Border Collie dog breed

article

CSF1R-dependent macrophages control postnatal somatic growth and organ maturation

scientific article published on 03 June 2021

Characterisation of subpopulations of chicken mononuclear phagocytes that express TIM4 and the macrophage colony-stimulating factor receptor (CSF1R)

article

Characterisation of the British honey bee metagenome

scientific article published in Nature Communications

Characterisation of the UK honey bee (Apis mellifera) metagenome

Characterization of Subpopulations of Chicken Mononuclear Phagocytes That Express TIM4 and CSF1R

scientific article published on 09 January 2019

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

scholarly article by Stephen J Bush et al published 7 August 2018 in BMC Genomics

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

scholarly article published 5 April 2018

Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression

scientific article published on 07 February 2019

Comprehensive transcriptional profiling of the gastrointestinal tract of ruminants from birth to adulthood reveals strong developmental stage specific gene expression

article

Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity.

scientific article

Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome

scientific article published on 24 April 2018

Environmentally enriched pigs have transcriptional profiles consistent with neuroprotective effects and reduced microglial activity

article

Evaluation of methods for detecting human reads in microbial sequencing datasets

scientific article published on 19 June 2020

Genetic and genomic analyses underpin the feasibility of concomitant genetic improvement of milk yield and mastitis resistance in dairy sheep

scientific article published on 25 November 2019

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism-calling pipelines

scientific article published on 01 February 2020

Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries

scientific article

Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level in A. thaliana

scientific article published on 5 June 2015

Network analysis of the social and demographic influences on name choice within the UK (1838-2016)

scientific article published in PLoS ONE

Network analysis of transcriptomic diversity amongst resident tissue macrophages and dendritic cells in the mouse mononuclear phagocyte system

scientific article published on 08 October 2020

Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes

scientific article published on 10 September 2015

Pleiotropic Impacts of Macrophage and Microglial Deficiency on Development in Rats with Targeted Mutation of the Locus

scientific article published on 24 September 2018

Presence-absence variation in A. thaliana is primarily associated with genomic signatures consistent with relaxed selective constraints

scientific article published on 25 September 2013

Rats exhibit age-related mosaic loss of chromosome Y

scientific article published on 21 December 2021

Species-Specific Transcriptional Regulation of Genes Involved in Nitric Oxide Production and Arginine Metabolism in Macrophages

article

The genomic architecture of mastitis resistance in dairy sheep

scientific article

Transcriptomic profiling of feline teeth highlights the role of matrix metalloproteinase 9 (MMP9) in tooth resorption

scientific article published on 03 November 2020

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