Search filters

List of works by Tanmoy Bhattacharya

A note on two-sample tests for comparing intra-individual genetic sequence diversity between populations

scientific article published on 24 September 2012

A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity

scientific article

A strongly selected mutation in the HIV-1 genome is independent of T cell responses and neutralizing antibodies.

scientific article published on 10 October 2017

Breadth of human immunodeficiency virus-specific neutralizing activity in sera: clustering analysis and association with clinical variables

scientific article

CAT: computer aided triage improving upon the Bayes risk through ε-refusal triage rules

scientific article published on 21 December 2018

CCL3L1 and HIV/AIDS susceptibility

article

Chaos and quantum mechanics

scientific article published in June 2005

Chiral and deconfinement aspects of the QCD transition

scholarly article

Chiral lattice gauge theories from warped domain walls and Ginsparg-Wilson fermions

scholarly article

Chiral transition andU(1)Asymmetry restoration from lattice QCD using domain wall fermions

scholarly article

Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.

scientific article published on 13 December 2006

Corrigendum to “Modeling sequence evolution in acute HIV-1 infection” [J. Theor. Biol. 261 (2009) 341–360]

article

Detecting regular sound changes in linguistics as events of concerted evolution

scientific article

Dimension-5CP-odd operators: QCD mixing and renormalization ⬇️

scholarly article

Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing

scientific article

Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection

scientific article

Equation of state and QCD transition at finite temperature

scholarly article

Equation of state in (2+1)-flavor QCD ⬇️

scholarly article

Estimating time since infection in early homogeneous HIV-1 samples using a poisson model

scientific article

Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1

scientific article

Evolutionary dynamics and information hierarchies in biological systems

scientific article published on 20 May 2013

Extensive intrasubtype recombination in South African human immunodeficiency virus type 1 subtype C infections

scientific article published on 21 February 2007

Feedback cooling of atomic motion in cavity QED

Fluctuations and correlations of net baryon number, electric charge, and strangeness: A comparison of lattice QCD results with the hadron resonance gas model

article

Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

scientific article published in Science

Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

scientific article published on June 2009

Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies

scientific article

Genital tract sequestration of SIV following acute infection

scientific article

HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC

scientific article

HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load

scientific article published on 23 April 2008

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

scientific article

Highly complex neutralization determinants on a monophyletic lineage of newly transmitted subtype C HIV-1 Env clones from India

scientific article published on 23 January 2009

Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection

scientific article

Human APOBEC3G-mediated editing can promote HIV-1 sequence diversification and accelerate adaptation to selective pressure

scientific article

Human leukocyte antigen-associated sequence polymorphisms in hepatitis C virus reveal reproducible immune responses and constraints on viral evolution

scientific article published in August 2007

Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

scientific article (publication date: 27 May 2008)

Impact of clade, geography, and age of the epidemic on HIV-1 neutralization by antibodies

scientific article

Impact of immune escape mutations on HIV-1 fitness in the context of the cognate transmitted/founder genome

scientific article

Improved bilinears in lattice QCD with nondegenerate quarks

scholarly article

Intragenomic Conflict over Bet-Hedging

Intragenomic conflict over bet-hedging

scientific article published on 01 February 2019

Isovector and isoscalar tensor charges of the nucleon from lattice QCD ⬇️

scholarly article

Kinship structures create persistent channels for language transmission

scientific article published on 20 November 2017

Lattice QCD at LANL

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

scientific article

Low-dose rectal inoculation of rhesus macaques by SIVsmE660 or SIVmac251 recapitulates human mucosal infection by HIV-1.

scientific article published on 04 May 2009

Modeling sequence evolution in HIV-1 infection with recombination

scientific article published on 6 April 2013

Modeling sequence evolution in acute HIV-1 infection

scientific article published on 04 August 2009

Molecular mechanisms of HIV type 1 prophylaxis failure revealed by single-genome sequencing

scientific article published on 09 September 2013

Neutron Electric Dipole Moment and Tensor Charges from Lattice QCD ⬇️

scientific article published in Physical Review Letters

Nucleon charges and electromagnetic form factors from2+1+1-flavor lattice QCD

scholarly article

On the universal structure of human lexical semantics ⬇️

scientific article

Optimal Combinations of Broadly Neutralizing Antibodies for Prevention and Treatment of HIV-1 Clade C Infection

scientific article

P.191 HLA-associated sequence polymorphisms in HCV reveal the reproducibility of immune responses and constraints on viral evolution

article

P.337 Rational design of HCV vaccine cocktails that maximize coverage of potential CTL epitopes

Polyvalent vaccines for optimal coverage of potential T-cell epitopes in global HIV-1 variants

scientific article published on 24 December 2006

Preexisting compensatory amino acids compromise fitness costs of a HIV-1 T cell escape mutation

scientific article

Probing novel scalar and tensor interactions from (ultra)cold neutrons to the LHC

scholarly article

QCD Phase Transition with Chiral Quarks and Physical Quark Masses ⬇️

scientific article published in Physical Review Letters

Quantifying the diversification of hepatitis C virus (HCV) during primary infection: estimates of the in vivo mutation rate

scientific article

Quantifying uncertainty in the inference of generalized coalescents

Quantitating the Multiplicity of Infection with Human Immunodeficiency Virus Type 1 Subtype C Reveals a Non-Poisson Distribution of Transmitted Variants.

scientific article published in July 2009

Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants

scientific article published on 04 February 2009

Recurrent signature patterns in HIV-1 B clade envelope glycoproteins associated with either early or chronic infections

scientific article

Reversion and T cell escape mutations compensate the fitness loss of a CD8+ T cell escape mutant in their cognate transmitted/founder virus

scientific article

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

scientific article published on 7 November 2011

Scaling behavior of discretization errors in renormalization and improvement constants

scholarly article

Single-Genome Sequencing of Hepatitis C Virus in Donor-Recipient Pairs Distinguishes Modes and Models of Virus Transmission and Early Diversification

scientific article

Spike mutation pipeline reveals the emergence of a more transmissible form of SARS-CoV-2

scientific article published on 01 May 2020

Superinfection and cure of infected cells as mechanisms for hepatitis C virus adaptation and persistence

article published in the Proceedings of the National Academy of Sciences of the United States of America

The Emergence of Life as a First-Order Phase Transition. ⬇️

scientific article published in March 2017

The HLA-B/-C haplotype block contains major determinants for host control of HIV

scientific article

The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

scientific article published on June 2009

Tiered categorization of a diverse panel of HIV-1 Env pseudoviruses for assessment of neutralizing antibodies

scientific article

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

scientific article

Web-based design and evaluation of T-cell vaccine candidates

scientific article published on 29 May 2008

Paulina is supported by:

About Paulina

Help