List of works by Michael Hackenberg

A comprehensive expression profile of microRNAs and other classes of non-coding small RNAs in barley under phosphorous-deficient and -sufficient conditions

scientific article published on 23 December 2012

A systems level analysis reveals transcriptomic and proteomic complexity in Ixodes ricinus midgut and salivary glands during early attachment and feeding.

scientific article

Algorithms and methods for correlating experimental results with annotation databases.

scientific article published on January 2010

Bioinformatic Analysis of Ixodes ricinus Long Non-Coding RNAs Predicts Their Binding Ability of Host miRNAs

scientific article published in 2022

Characterization of phosphorus-regulated miR399 and miR827 and their isomirs in barley under phosphorus-sufficient and phosphorus-deficient conditions

scientific article

Clustering of DNA words and biological function: a proof of principle.

scientific article published on 30 December 2011

ContDist: a tool for the analysis of quantitative gene and promoter properties

scientific article

CpGcluster: a distance-based algorithm for CpG-island detection

scientific article

CpGislandEVO: a database and genome browser for comparative evolutionary genomics of CpG islands.

scientific article published on 25 September 2013

DNA clustering and genome complexity

scientific article published on 23 August 2014

Differential expression of microRNAs and other small RNAs in barley between water and drought conditions.

scientific article

Exosome-Mediated Pathogen Transmission by Arthropod Vectors

scholarly article published by Michael Hackenberg in 2018

Expression of herpes simplex virus 1 microRNAs in cell culture models of quiescent and latent infection

scientific article published on 4 December 2013

Functional Enrichment Analysis of Regulatory Elements

scientific article published on 03 March 2022

Generation of different sizes and classes of small RNAs in barley is locus, chromosome and/or cultivar-dependent.

scientific article

Herpes simplex virus 1 miRNA sequence variations in latently infected human trigeminal ganglia

scholarly article by Maja Cokarić Brdovčak published in September 2018

High-level organization of isochores into gigantic superstructures in the human genome.

scientific article published on 15 March 2011

Identification and characterisation of a previously unknown drought tolerance-associated microRNA in barley.

scientific article published on 22 April 2018

Identification of tomato miRNAs responsive to root colonization by endophytic Pochonia chlamydosporia.

scientific article published on 5 November 2017

Identifying characteristic scales in the human genome

scientific article published on 16 March 2007

In silico target network analysis of de novo-discovered, tick saliva-specific microRNAs reveals important combinatorial effects in their interference with vertebrate host physiology

scientific article

Integrated microRNA, mRNA, and protein expression profiling reveals microRNA regulatory networks in rat kidney treated with a carcinogenic dose of aristolochic acid.

scientific article published on 8 May 2015

Isochore chromosome maps of the human genome.

scientific article published in October 2002

Level statistics of words: Finding keywords in literary texts and symbolic sequences

scientific article published on 10 March 2009

Mesenchymal stem cell's secretome promotes selective enrichment of cancer stem-like cells with specific cytogenetic profile

scientific article published on 05 May 2018

MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data.

scientific article

NGSmethDB 2017: enhanced methylomes and differential methylation

scientific article

NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data ⬇️

scientific article published on October 21, 2010

NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes

scientific article

Noncoding RNAs in Parasite-Vector-Host Interactions

scientific article published on 15 July 2019

Nontemplated nucleotide additions distinguish the small RNA composition in cells from exosomes

scientific article published on 18 September 2014

Non‑invasive prostate cancer detection by measuring miRNA variants (isomiRs) in urine extracellular vesicles.

scientific article published on 16 March 2016

On the presence and immunoregulatory functions of extracellular microRNAs in the trematode Fasciola hepatica

scientific article published on 3 November 2016

Phylogenetic distribution of large-scale genome patchiness

scientific article

Prediction of CpG Islands as an Intrinsic Clustering Property Found in Many Eukaryotic DNA Sequences and Its Relation to DNA Methylation

scientific article published on 01 January 2018

Prediction of CpG-island function: CpG clustering vs. sliding-window methods

scientific article

Segmentation of time series with long-range fractal correlations.

scientific article published on June 2012

Sensing of latent EBV infection through exosomal transfer of 5'pppRNA

scientific article published on 14 January 2016

Sources of individual variability: miRNAs that predispose to neuropathic pain identified using genome-wide sequencing

scientific article

Surface analysis of Dicrocoelium dendriticum. The molecular characterization of exosomes reveals the presence of miRNAs.

scientific article published on 21 February 2014

TargetSpy: a supervised machine learning approach for microRNA target prediction

scientific article

The biased distribution of Alus in human isochores might be driven by recombination.

scientific article published in March 2005

The revised microRNA complement of Fasciola hepatica reveals a plethora of overlooked microRNAs and evidence for enrichment of immuno-regulatory microRNAs in extracellular vesicles

article

Thiourea priming enhances salt tolerance through co-ordinated regulation of microRNAs and hormones in Brassica juncea

scientific article

Transcriptional Dynamics and Candidate Genes Involved in Pod Maturation of Common Bean (Phaseolus vulgaris L.).

scientific article published on 22 April 2020

Viral Ubiquitin Ligase Stimulates Selective Host MicroRNA Expression by Targeting ZEB Transcriptional Repressors.

scientific article published on 07 August 2017

Whole transcriptome analysis of a reversible neurodegenerative process in Drosophila reveals potential neuroprotective genes.

scientific article

WordCluster: detecting clusters of DNA words and genomic elements.

scientific article published on 24 January 2011

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies

scientific article published on 01 January 2019

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

scientific article

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments

scientific article

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression

scientific article published on 01 July 2019

sRNAtoolbox: an integrated collection of small RNA research tools

scientific article

sRNAtoolboxVM: Small RNA Analysis in a Virtual Machine.

scientific article published on January 2017

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