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List of works by Philip Supply

"A re-evaluation of M. prototuberculosis": continuing the debate

scientific article published in September 2006

A four-year nationwide molecular epidemiological study in Estonia: risk factors for tuberculosis transmission

scientific article

A glimpse into the past and predictions for the future: the molecular evolution of the tuberculosis agent

scientific article published on 3 August 2014

A new series of mycobacterial expression vectors for the development of live recombinant vaccines

scientific article

A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region

scientific article published on 09 June 2020

Accuracy of whole-genome sequencing to determine recent tuberculosis transmission: an 11-year population-based study in Hamburg, Germany

scientific article published on 28 November 2019

Acquisition through horizontal gene transfer of plasmid pSMA198 by Streptococcus macedonicus ACA-DC 198 points towards the dairy origin of the species

scientific article

Admixed phylogenetic distribution of drug resistant Mycobacterium tuberculosis in Saudi Arabia

scientific article

Against All Odds: Molecular Confirmation of an Implausible Case of Bone Tuberculosis

scholarly article by C. Loiez et al published 1 June 2006 in Clinical Infectious Diseases

Amino Acid Replacements at Seven Different Histidines in the Yeast Plasma Membrane H+−ATPase Reveal Critical Positions at His285 and His701†

scientific article published in 1996

An Outpatient Clinic as a Potential Site of Transmission for an Outbreak of New Delhi Metallo-β-Lactamase-producing Klebsiella pneumoniae Sequence Type 716: A Study Using Whole-genome Sequencing

scientific article published on 01 March 2019

Analysis of Mycobacterium tuberculosis genetic lineages circulating in Riga and Riga region, Latvia, isolated between 2008 and 2012

scientific article published on 26 November 2019

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis

scientific article published on 19 August 2005

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

scientific article published on 02 December 2019

Application of machine learning techniques to tuberculosis drug resistance analysis

scholarly article by Samaneh Kouchaki et al published 21 November 2018 in Bioinformatics

Assessment of an optimized mycobacterial interspersed repetitive- unit-variable-number tandem-repeat typing system combined with spoligotyping for population-based molecular epidemiology studies of tuberculosis

scientific article published on 27 December 2006

Changing patterns of human migrations shaped the global population structure of Mycobacterium tuberculosis in France

scientific article

Characterization of a novel variant of Mycobacterium chimaera

scientific article published on 14 June 2012

Characterization of ancestral Mycobacterium tuberculosis by multiple genetic markers and proposal of genotyping strategy

scientific article

Clonal expansion of a globally disseminated lineage of Mycobacterium tuberculosis with low IS6110 copy numbers.

scientific article published on December 2004

Clustering of tuberculosis cases based on variable-number tandem-repeat typing in relation to the population structure of Mycobacterium tuberculosis in the Netherlands

scientific article published on 08 May 2013

Combined multilocus short-sequence-repeat and mycobacterial interspersed repetitive unit-variable-number tandem-repeat typing of Mycobacterium avium subsp. paratuberculosis isolates

scientific article published on 15 October 2008

Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex

scientific article

Comparative study of IS6110 restriction fragment length polymorphism and variable-number tandem-repeat typing of Mycobacterium tuberculosis isolates in the Netherlands, based on a 5-year nationwide survey

scientific article published on 30 January 2013

Compensatory evolution drives multidrug-resistant tuberculosis in Central Asia

scientific article published on 30 October 2018

Complete genome sequence of the dairy isolate Streptococcus macedonicus ACA-DC 198.

scientific article published in April 2012

Culture and Next-generation sequencing-based drug susceptibility testing unveil high levels of drug-resistant-TB in Djibouti: results from the first national survey

scientific article published on 15 December 2017

Determination of genotypic diversity of Mycobacterium avium subspecies from human and animal origins by mycobacterial interspersed repetitive-unit-variable-number tandem-repeat and IS1311 restriction fragment length polymorphism typing methods

scientific article published on 27 January 2010

Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strains

scientific article

Diversity and evolution of Mycobacterium tuberculosis: moving to whole-genome-based approaches

scientific article

Drug-Resistant Tuberculosis, Lebanon, 2016 - 2017

scientific article published on 01 March 2019

Evaluation and strategy for use of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates

scientific article

Evaluation of 24-locus MIRU-VNTR in extrapulmonary specimens: study from a tertiary centre in Mumbai

scientific article published on 8 February 2012

Evaluation of mycobacterial interspersed repetitive-unit-variable-number tandem-repeat genotyping as performed in laboratories in Canada, France, and the United States

scientific article published in May 2012

Evaluation of the Epidemiological Relevance of Variable-Number Tandem-Repeat Genotyping of Mycobacterium bovis and Comparison of the Method with IS6110 Restriction Fragment Length Polymorphism Analysis and Spoligotyping

article

Evaluation of the epidemiological relevance of variable-number tandem-repeat genotyping of Mycobacterium bovis and comparison of the method with IS6110 restriction fragment length polymorphism analysis and spoligotyping

scientific article

Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage

scientific article published on 19 January 2015

First molecular epidemiology study of Mycobacterium tuberculosis in Burkina Faso

scientific article published on 24 January 2007

First worldwide proficiency study on variable-number tandem-repeat typing of Mycobacterium tuberculosis complex strains

scientific article published on 14 December 2011

From multidrug- to extensively drug-resistant tuberculosis: upward trends as seen from a 15-year nationwide study

scientific article

Functional Complementation of a Null Mutation of the YeastSaccharomyces cerevisiaePlasma Membrane H+-ATPase by a Plant H+-ATPase Gene

scientific article published in Journal of Biological Chemistry

Functional analysis of chimerical plasma membrane H+-ATPases fromSaccharomyces cerevisiaeandSchizosaccharomyces pombe

scientific article published on 01 July 1997

Genetic diversity and population structure of Mycobacterium tuberculosis in Casablanca, a Moroccan city with high incidence of tuberculosis

scientific article published on January 2004

Genetic diversity of Mycobacterium tuberculosis isolates from a tertiary care tuberculosis hospital in South Korea

scientific article

Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis

scientific article published on 06 January 2013

Genotypic and Phenotypic Heterogeneity among Mycobacterium tuberculosis Isolates from Pulmonary Tuberculosis Patients

scientific article published in February 2005

Genotypic and phenotypic heterogeneity among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients

scientific article published on December 2004

High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology

scientific article

Horizontal acquisition of a hypoxia-responsive molybdenum cofactor biosynthesis pathway contributed to Mycobacterium tuberculosis pathoadaptation

scientific article

How Well Do Routine Molecular Diagnostics Detect Rifampin Heteroresistance in Mycobacterium tuberculosis?

scientific article published on 23 October 2019

Identification of a New DNA Region Specific for Members of Mycobacterium tuberculosis Complex ⬇️

scientific article published on April 1, 1998

Identification of novel intergenic repetitive units in a mycobacterial two‐component system operon ⬇️

scientific article published on December 1, 1997

Immunogenicity of recombinant BCG producing the GRA1 antigen from Toxoplasma gondii.

scientific article

Impact of Genetic Diversity on the Biology of Mycobacterium tuberculosis Complex Strains

scientific article published on November 2016

Impact of HIV Infection on the Recurrence of Tuberculosis in South India

scientific article published in March 2010

Importance of identifying Mycobacterium bovis as a causative agent of human tuberculosis

scholarly article by C. Allix-Beguec et al published 28 February 2010 in European Respiratory Journal

Inter- and intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains

scientific article published on 19 November 2012

International spread of MDR TB from Tugela Ferry, South Africa

scientific article published in November 2011

Intracellular autoregulation of the Mycobacterium tuberculosis PrrA response regulator

article

Key experimental evidence of chromosomal DNA transfer among selected tuberculosis-causing mycobacteria

scientific article published on 15 August 2016

Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area

scientific article published in January 2003

MAC-INMV-SSR: a web application dedicated to genotyping members of Mycobacterium avium complex (MAC) including Mycobacterium avium subsp. paratuberculosis strains

scientific article published on 18 October 2019

MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria

scientific article published on 10 May 2010

Microevolution of Mycobacterium tuberculosis in a tuberculosis patient

scientific article

Mixed infection and clonal representativeness of a single sputum sample in tuberculosis patients from a penitentiary hospital in Georgia

scientific article published on 17 July 2006

Molecular Typing of Mycobacterium Tuberculosis Complex by 24-Locus Based MIRU-VNTR Typing in Conjunction with Spoligotyping to Assess Genetic Diversity of Strains Circulating in Morocco

scientific article

Molecular typing of Mycobacterium tuberculosis by mycobacterial interspersed repetitive unit-variable-number tandem repeat analysis, a more accurate method for identifying epidemiological links between patients with tuberculosis

scientific article

Multidrug-resistant tuberculosis outbreak in South Africa - Authors' reply

scientific article published on 06 December 2018

Multilocus variable-number tandem repeat typing of Mycobacterium ulcerans

scientific article

Mycobacterial Pathogenomics and Evolution

scientific article published on February 2014

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

scientific article published on 31 October 2016

New variable-number tandem-repeat markers for typing Mycobacterium avium subsp. paratuberculosis and M. avium strains: comparison with IS900 and IS1245 restriction fragment length polymorphism typing

scientific article published on 30 May 2007

Novel transport ATPases in yeast

scientific article published on July 1990

Occurrence and Nature of Double Alleles in Variable-Number Tandem-Repeat Patterns of More than 8,000 Mycobacterium tuberculosis Complex Isolates in The Netherlands

scientific article published on 15 November 2017

On the mutation rates of spoligotypes and variable numbers of tandem repeat loci of Mycobacterium tuberculosis

scientific article published in March 2011

One year nationwide evaluation of 24-locus MIRU-VNTR genotyping on Slovenian Mycobacterium tuberculosis isolates

scientific article published on 01 October 2011

Online tools for polyphasic analysis of Mycobacterium tuberculosis complex genotyping data: now and next.

scientific article

Optimization of standard 24-locus variable-number tandem-repeat typing of Mycobacterium tuberculosis isolates: a multicenter perspective

scientific article published in September 2014

Origin, spread and demography of the Mycobacterium tuberculosis complex

scientific article published in 2008

Outbreak of multidrug-resistant tuberculosis in South Africa undetected by WHO-endorsed commercial tests: an observational study

scientific article published on 18 October 2018

Pan-genome multilocus sequence typing and outbreak-specific reference-based single nucleotide polymorphism analysis to resolve two concurrent Staphylococcus aureus outbreaks in neonatal services

scientific article

Pathogenomics of Mycobacteria

article

Patient nostril microbial flora: individual-dependency and diversity precluding prediction of Staphylococcus aureus acquisition.

scientific article published on 18 April 2013

Precision tuberculosis control by genome sequencing: Benefit and challenges of a new standard

scientific article published on 01 September 2018

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing

scientific article published on 26 September 2018

Predominance of ancestral lineages of Mycobacterium tuberculosis in India

scientific article published on September 2006

Proliferation of intracellular structures upon overexpression of the PMA2 ATPase in Saccharomyces cerevisiae

scientific article published in Journal of Biological Chemistry

Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis

scientific article

Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolates

scientific article published on 30 October 2013

Prospective genotyping of Mycobacterium tuberculosis from fresh clinical samples

scientific article

Rapid, comprehensive, and affordable mycobacterial diagnosis with whole-genome sequencing: a prospective study ⬇️

scientific article

Rapidly progressing tuberculosis outbreak in a very low risk group.

scientific article published on 10 October 2013

Regulation of the expression of the H(+)-ATPase genes PMA1 and PMA2 during growth and effects of octanoic acid in Saccharomyces cerevisiae

article

Repetitive sequences in Mycobacterium leprae and their impact on genome plasticity

scientific article published on 01 December 2001

Second worldwide proficiency study on variable number of tandem repeats typing of Mycobacterium tuberculosis complex

scientific article published on May 2014

Set-up and validation of mycobacterial interspersed repetitive unit-variable number of tandem repeat (MIRU-VNTR) analysis of Mycobacterium tuberculosis using BioNumerics software

scientific article published in PLoS ONE

Specific differentiation between Mycobacterium bovis BCG and virulent strains of the Mycobacterium tuberculosis complex.

scientific article published on September 1998

Stability of variable-number tandem repeats of mycobacterial interspersed repetitive units from 12 loci in serial isolates of Mycobacterium tuberculosis

scientific article

Standardised PCR-based molecular epidemiology of tuberculosis

article

Strain-specific estimation of epidemic success provides insights into the transmission dynamics of tuberculosis

scientific article published on 28 March 2017

The Biology and Epidemiology of Mycobacterium canettii

scientific article published in January 2017

The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex

scientific article

The forest behind the tree: phylogenetic exploration of a dominant Mycobacterium tuberculosis strain lineage from a high tuberculosis burden country

scientific article (publication date: 25 March 2011)

The yeast plasma membrane H(+)-ATPase. An essential change of conformation triggered by H+ ⬇️

scientific article published on February 25, 1992

Thein vivo activation ofSaccharomyces cerevisiae plasma membrane H+-ATPase by ethanol depends on the expression of thePMA1 gene, but not of thePMA2 gene

article

Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis

scientific article published on 30 January 2008

Transient requirement of the PrrA-PrrB two-component system for early intracellular multiplication of Mycobacterium tuberculosis

scientific journal article

Tuberculosis transmission among immigrants and autochthonous populations of the eastern province of Saudi Arabia

scientific article (publication date: 2013)

Updating the WHO target product profile for next-generation Mycobacterium tuberculosis drug susceptibility testing at peripheral centres ⬇️

scientific article published on 31 March 2023

Use of mycobacterial interspersed repetitive unit-variable-number tandem repeat typing to examine genetic diversity of Mycobacterium tuberculosis in Singapore

scientific article

Use of variable-number tandem-repeat typing to differentiate Mycobacterium tuberculosis Beijing family isolates from Hong Kong and comparison with IS6110 restriction fragment length polymorphism typing and spoligotyping

scientific article

Utility of fast mycobacterial interspersed repetitive unit-variable number tandem repeat genotyping in clinical mycobacteriological analysis

scientific article published on 27 August 2004

Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome

scientific article published on 01 May 2000

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

scientific article published on 01 September 2019

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study

scientific article (publication date: 2013)

Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study

scientific article published on 23 June 2015

Zoonotic tuberculosis in humans assessed by next-generation sequencing: an 18-month nationwide study in Lebanon

scientific article published on 02 January 2020

[Mycobacterial bovis BCG cutaneous infections following mesotherapy: 2 cases]

scientific article published on 01 May 2002

pks5-recombination-mediated surface remodelling in Mycobacterium tuberculosis emergence

scientific article published on 27 January 2016

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