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List of works by Yuji Sekiguchi

An expanded genomic representation of the phylum cyanobacteria

scientific article

An rRNA-based analysis for evaluating the effect of heat stress on the rumen microbial composition of Holstein heifers.

scientific article

Anaerolinea thermolimosa sp. nov., Levilinea saccharolytica gen. nov., sp. nov. and Leptolinea tardivitalis gen. nov., sp. nov., novel filamentous anaerobes, and description of the new classes Anaerolineae classis nov. and Caldilineae classis nov. i

scientific article

Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level

scientific article

Anaerosporobacter mobilis gen. nov., sp. nov., isolated from forest soil

scientific article

Application of pseudomurein endoisopeptidase to fluorescence in situ hybridization of methanogens within the family Methanobacteriaceae

scientific article

Archaeal community compositions at different depths (up to 30 m) of a municipal solid waste landfill in Taiwan as revealed by 16S rDNA cloning analyses

scientific article

Bellilinea caldifistulae gen. nov., sp. nov. and Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia

scientific article

Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements

scientific article published on 02 March 2022

Characterization of filamentous bacteria, belonging to candidate phylum KSB3, that are associated with bulking in methanogenic granular sludges

scientific article

Cholesterol sulfate as a potential inhibitor of hepatitis C virus NS3 helicase.

scientific article published on 25 February 2013

Clostridium jejuense sp. nov., isolated from soil

scientific article

Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage.

scientific article published on 28 November 2015

Comparative Genomics of Syntrophic Branched-Chain Fatty Acid Degrading Bacteria

scientific article published on 16 July 2016

Comparative analysis of bacterial and archaeal communities in methanogenic sludge granules from upflow anaerobic sludge blanket reactors treating various food-processing, high-strength organic wastewaters

scientific article

Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques

scientific article published in April 2005

Comparison of electrode reduction activities of Geobacter sulfurreducens and an enriched consortium in an air-cathode microbial fuel cell

scientific article published on 03 October 2008

Cultivation and in situ detection of a thermophilic bacterium capable of oxidizing propionate in syntrophic association with hydrogenotrophic methanogens in a thermophilic methanogenic granular sludge

scientific article

Cultivation of methanogens under low-hydrogen conditions by using the coculture method

scientific article published on 22 May 2009

Desulfovibrio marinisediminis sp. nov., a novel sulfate-reducing bacterium isolated from coastal marine sediment via enrichment with Casamino acids

scientific article

Desulfovibrio marinisediminis sp. nov., a novel sulfate-reducing bacterium isolated from coastal marine sediment via enrichment with Casamino acids

scientific article published in November 2008

Dethiosulfatibacter aminovorans gen. nov., sp. nov., a novel thiosulfate-reducing bacterium isolated from coastal marine sediment via sulfate-reducing enrichment with Casamino acids

scientific article

Diversity, localization, and physiological properties of filamentous microbes belonging to Chloroflexi subphylum I in mesophilic and thermophilic methanogenic sludge granules

scientific article published in November 2005

Draft Genome Sequence of Anaerolineae Strain TC1, a Novel Isolate from a Methanogenic Wastewater Treatment System

scientific article

Draft Genome Sequence of Bacteroidales Strain 6E, Isolated from a Rice Paddy Field in Japan

scientific article

Draft Genome Sequence of Bacteroidales Strain TBC1, a Novel Isolate from a Methanogenic Wastewater Treatment System

scientific article

Draft Genome Sequence of Paludibacter jiangxiensis NM7T, a Propionate-Producing Fermentative Bacterium

scientific article published on 20 July 2017

Draft Genome Sequence of Syntrophorhabdus aromaticivorans Strain UI, a Mesophilic Aromatic Compound-Degrading Syntroph

scientific article published on 06 February 2014

Draft Genome Sequence of Terrimicrobium sacchariphilum NM-5T, a Facultative Anaerobic Soil Bacterium of the Class Spartobacteria

scientific article published on 27 July 2017

Draft Genome Sequence of Thermodesulfovibrio aggregans TGE-P1T, an Obligately Anaerobic, Thermophilic, Sulfate-Reducing Bacterium in the Phylum Nitrospirae

scientific article published on 10 March 2016

Draft Genome Sequence of the Syntrophic Lactate-Degrading Bacterium Tepidanaerobacter syntrophicus JLT.

scientific article published on 11 February 2016

Draft Genome Sequences of Anaerolinea thermolimosa IMO-1, Bellilinea caldifistulae GOMI-1, Leptolinea tardivitalis YMTK-2, Levilinea saccharolytica KIBI-1, Longilinea arvoryzae KOME-1, Previously Described as Members of the Class Anaerolineae (Chlor

scientific article

Ecological niche separation in the Polynucleobacter subclusters linked to quality of dissolved organic matter: a demonstration using a high sensitivity cultivation-based approach

scientific article

Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor

scientific article (publication date: 2016)

Ecophysiology of uncultured filamentous anaerobes belonging to the phylum KSB3 that cause bulking in methanogenic granular sludge

scientific article

Effect of gelling agent on colony formation in solid cultivation of microbial community in lake sediment

scientific article published on 18 March 2009

Enhanced electrode-reducing rate during the enrichment process in an air-cathode microbial fuel cell

scientific article

Estimation of single-nucleotide polymorphism allele frequency by alternately binding probe competitive polymerase chain reaction.

scientific article

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.

scientific article

Four Aromatic Sulfates with an Inhibitory Effect against HCV NS3 Helicase from the Crinoid Alloeocomatella polycladia

scientific article

Functionally stable and phylogenetically diverse microbial enrichments from microbial fuel cells during wastewater treatment

scientific article

Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov

scientific article (publication date: July 2003)

Genomic Analysis of Two Phylogenetically Distinct Nitrospira Species Reveals Their Genomic Plasticity and Functional Diversity

scientific article published in January 2017

Identification and biochemical characterization of halisulfate 3 and suvanine as novel inhibitors of hepatitis C virus NS3 helicase from a marine sponge

scientific article published on 21 January 2014

Identification and isolation of anaerobic, syntrophic phthalate isomer-degrading microbes from methanogenic sludges treating wastewater from terephthalate manufacturing

scientific article published on March 2004

Identification of Hydroxyanthraquinones as Novel Inhibitors of Hepatitis C Virus NS3 Helicase.

scientific article

Impact of consumption of probiotic lactobacilli-containing yogurt on microbial composition in human feces.

scientific article published on 21 November 2007

In situ detection and quantification of uncultured members of the phylum Nitrospirae abundant in methanogenic wastewater treatment systems

scientific article

In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non-sulfur bacteria, subdivision I.

scientific article

Inhibition of both protease and helicase activities of hepatitis C virus NS3 by an ethyl acetate extract of marine sponge Amphimedon sp

scientific article

Inhibition of hepatitis C virus NS3 helicase by manoalide.

scientific article published on 6 March 2012

Inhibition of hepatitis C virus replication and viral helicase by ethyl acetate extract of the marine feather star Alloeocomatella polycladia

scientific article

Isolation and characterization of Flexilinea flocculi gen. nov., sp. nov., a filamentous anaerobic bacterium belonging to the class Anaerolineae in the phylum Chloroflexi

scientific article published on 4 December 2015

Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I

scientific article published on 4 May 2007

Lactivibrio alcoholicus gen. nov., sp. nov., an anaerobic, mesophilic, lactate-, alcohol-, carbohydrate- and amino-acid-degrading bacterium in the phylum Synergistetes

scientific article

Lentimicrobium saccharophilum gen. nov., sp. nov., a strictly anaerobic bacterium representing a new family in the phylum Bacteroidetes, and proposal of Lentimicrobiaceae fam. nov.

scientific article

Methanolinea tarda gen. nov., sp. nov., a methane-producing archaeon isolated from a methanogenic digester sludge

scientific article

Microbial communities in anaerobic digestion processes for waste and wastewater treatment: a microbiological update

scientific article published on 25 April 2007

Microbial community structure of methanogenic benzene-degrading cultures enriched from five different sediments

scientific article

Microbial population and functional dynamics associated with surface potential and carbon metabolism

scientific article published on 19 December 2013

Molecular detection and direct enumeration of methanogenic Archaea and methanotrophic Bacteria in domestic solid waste landfill soils

scientific article published in September 2003

Network-guided genomic and metagenomic analysis of the faecal microbiota of the critically endangered kakapo.

scientific article

Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments

scientific article

Oligonucleotide primers, probes and molecular methods for the environmental monitoring of methanogenic archaea ⬇️

scientific article published on January 10, 2011

Oligosphaera ethanolica gen. nov., sp. nov., an anaerobic, carbohydrate-fermenting bacterium isolated from methanogenic sludge, and description of Oligosphaeria classis nov. in the phylum Lentisphaerae

scientific article

PBDE: structure-activity studies for the inhibition of hepatitis C virus NS3 helicase.

scientific article published on 2 April 2014

Pelotomaculum propionicicum sp. nov., an anaerobic, mesophilic, obligately syntrophic, propionate-oxidizing bacterium

scientific article

Pelotomaculum terephthalicum sp. nov. and Pelotomaculum isophthalicum sp. nov.: two anaerobic bacteria that degrade phthalate isomers in syntrophic association with hydrogenotrophic methanogens

scientific article

Phylogenetic analysis and fluorescence in situ hybridization detection of archaeal and bacterial endosymbionts in the anaerobic ciliate trimyema compressum

scientific article published on 29 April 2007

Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis.

scientific article

Psammaplin A inhibits hepatitis C virus NS3 helicase.

scientific article published on 29 January 2013

Quantitative detection of Cryptosporidium oocyst in water source based on 18S rRNA by alternately binding probe competitive reverse transcription polymerase chain reaction (ABC-RT-PCR).

scientific article published on 29 October 2011

Quantitative detection of chloroethene-reductive bacteria Dehalococcoides spp. using alternately binding probe competitive Polymerase Chain Reaction.

scientific article

Quantitative detection of culturable methanogenic archaea abundance in anaerobic treatment systems using the sequence-specific rRNA cleavage method

scientific article published on 12 February 2009

Quantitative detection of human enteric adenoviruses in river water by microfluidic digital polymerase chain reaction.

scientific article published on January 2014

Quantitative detection of previously characterized syntrophic bacteria in anaerobic wastewater treatment systems by sequence-specific rRNA cleavage method

scientific article

Real-time monitoring of RNA helicase activity using fluorescence resonance energy transfer in vitro.

scientific article published in February 2010

Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing

scientific article

Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing

erratum published 29 April 2003 in Archives of Microbiology

Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing

scientific article

Syntrophorhabdus aromaticivorans gen. nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen

scientific article

Tepidanaerobacter syntrophicus gen. nov., sp. nov., an anaerobic, moderately thermophilic, syntrophic alcohol- and lactate-degrading bacterium isolated from thermophilic digested sludges

scientific article

The genome ofSyntrophorhabdus aromaticivoransstrain UI provides new insights for syntrophic aromatic compound metabolism and electron flow

scientific article

Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio

scientific article

Validation and standardization of DNA extraction and library construction methods for metagenomics-based human fecal microbiome measurements

scientific article published on 29 April 2021

rRNA-based analysis to monitor succession of faecal bacterial communities in Holstein calves

scientific article published on 16 September 2010

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