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List of works by Georgios A. Pavlopoulos

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scientific article published on 12 June 2017

A Guide to Conquer the Biological Network Era Using Graph Theory

scientific article published on 31 January 2020

A Simple Genetic Algorithm for Biomarker Mining

A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs

A reference guide for tree analysis and visualization

scientific article (publication date: 22 February 2010)

A survey of visualization tools for biological network analysis

scientific article

An enhanced Markov clustering method for detecting protein complexes

Analyzing Protein-Protein Interaction Networks with Web Tools

Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease

scientific article (publication date: 2012)

Apolipoprotein A-I inhibits experimental colitis and colitis-propelled carcinogenesis.

scientific article published on 17 August 2015

Arena3D: visualization of biological networks in 3D.

scientific article

Arena3D: visualizing time-driven phenotypic differences in biological systems

scientific article

Bee foraging preferences, microbiota and pathogens revealed by direct shotgun metagenomics of honey

scientific article published on 20 May 2022

BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery

scientific article published on 6 August 2014

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery

scientific article published on 11 February 2015

Biological information extraction and co-occurrence analysis

scientific article published on January 2014

Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review

publication published on 20 August 2021

Blood Transcriptomes of Anti-SARS-CoV-2 Antibody-Positive Healthy Individuals Who Experienced Asymptomatic <i>Versus</i> Clinical Infection

scientific article published on 05 October 2021

Caipirini: using gene sets to rank literature.

scientific article published on February 2012

Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.

scientific article published on 19 March 2018

Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining

scientific article published on 30 March 2022

Diversity, evolution, and classification of virophages uncovered through global metagenomics

scientific article published on 10 December 2019

DrugQuest - a text mining workflow for drug association discovery

scientific article

Erratum: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life

scholarly article published in Nature Biotechnology

GIBA: a clustering tool for detecting protein complexes

scientific article published on 16 June 2009

How to Cluster Protein Sequences: Tools, Tips and Commands

Human gene correlation analysis (HGCA): a tool for the identification of transcriptionally co-expressed genes

scientific article

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

scientific article published on 30 October 2016

Interpreting the Omics ‘era’ Data

LAITOR--Literature Assistant for Identification of Terms co-Occurrences and Relationships ⬇️

scientific article (publication date: February 2010)

Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes

scientific article published on 08 August 2019

Meander: visually exploring the structural variome using space-filling curves

scientific article

Medusa: A tool for exploring and clustering biological networks

scientific article

Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies

scientific article

Mining Cell Cycle Literature Using Support Vector Machines

Molecular Epidemiology of SARS-CoV-2 in Greece Reveals Low Rates of Onward Virus Transmission after Lifting of Travel Restrictions Based on Risk Assessment during Summer 2020

scientific article published on 30 June 2021

NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks

scientific article

Network analysis of genes and their association with diseases

scientific article

Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data

scientific article

OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction

scientific article (publication date: November 2013)

OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis

scientific article published on 10 October 2021

OnTheFly: a tool for automated document-based text annotation, data linking and network generation

scientific article

Prediction of miRNA targets

scientific article published on January 2015

Protein-protein interaction predictions using text mining methods

scientific article

ProteoSign: an end-user online differential proteomics statistical analysis platform

scientific article published on 17 May 2017

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings

scientific article

Structure determination of the HgcAB complex using metagenome sequence data: insights into microbial mercury methylation

scientific article published on 19 June 2020

Towards Better Prioritization of Epigenetically Modified DNA Regions

Uncovering Earth’s virome

scientific article (publication date: 17 August 2016)

Unraveling genomic variation from next generation sequencing data

scientific article

Using graph theory to analyze biological networks

scientific article

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

scientific article (publication date: 2015)

Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization

article

Which clustering algorithm is better for predicting protein complexes?

scientific article

jClust: a clustering and visualization toolbox

scientific article published on 19 May 2009

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