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List of works by Johannes Graumann

A PhotoClick cholesterol-based quantitative proteomics screen for cytoplasmic sterol-binding proteins in Saccharomyces cerevisiae

scientific article published on 01 January 2020

A SILAC-based approach identifies substrates of caspase-dependent cleavage upon TRAIL-induced apoptosis

scientific article published on 13 January 2013

A Systems-level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells

scientific article published on 22 July 2019

A framework for intelligent data acquisition and real-time database searching for shotgun proteomics

scientific article

Activation of the Redox-Regulated Molecular Chaperone Hsp33—A Two-Step Mechanism

scientific article published on 01 May 2001

Adaptation of a commonly used, chemically defined medium for human embryonic stem cells to stable isotope labeling with amino acids in cell culture

scientific article published on 25 June 2013

An Isogenic Human ESC Platform for Functional Evaluation of Genome-wide-Association-Study-Identified Diabetes Genes and Drug Discovery.

scientific article published on 9 August 2016

Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets

scientific article

Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast

scientific article

Author Correction: Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease

scientific article published in Nature Communications

Cardiolipin depletion-induced changes in the Trypanosoma brucei proteome

scientific article published on 19 September 2019

Cell-type-selective pathways and clinical associations of lysophosphatidic acid biosynthesis and signaling in the ovarian cancer microenvironment

article

Characterization of mast cell-derived rRNA-containing microvesicles and their inflammatory impact on endothelial cells

scientific article published on 31 January 2019

Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming

scientific article published on June 2010

Complementarity of SOMAscan to LC-MS/MS and RNA-seq for quantitative profiling of human embryonic and mesenchymal stem cells

scientific article published on 6 September 2016

Complexity of the eukaryotic dolichol-linked oligosaccharide scramblase suggested by activity correlation profiling mass spectrometry

scientific article published on 14 January 2021

Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers

scientific article

Connecting genetic risk to disease end points through the human blood plasma proteome

scientific article published on 27 February 2017

Deciphering the Plasma Proteome of Type 2 Diabetes

scientific article published on 14 September 2020

Deep molecular phenotypes link complex disorders and physiological insult to CpG methylation.

scientific article published on 8 January 2018

Depletion of cardiolipin induces major changes in energy metabolism in Trypanosoma brucei bloodstream forms

scientific article published on 13 November 2020

Digenic inheritance of mutations in EPHA2 and SLC26A4 in Pendred syndrome

scientific article published on 12 March 2020

Dimerization deficiency of enigmatic retinitis pigmentosa-linked rhodopsin mutants

scientific article published on 03 October 2016

Dual-platform affinity proteomics identifies links between the recurrence of ovarian carcinoma and proteins released into the tumor microenvironment

scientific article published on 22 August 2019

Epigenetic therapy of novel tumour suppressor ZAR1 and its cancer biomarker function

scientific article published on 04 December 2019

Epigenetics meets proteomics in an epigenome-wide association study with circulating blood plasma protein traits

scientific article published on 03 January 2020

Fine-Mapping of the Human Blood Plasma N-Glycome onto Its Proteome

scientific article published on 26 June 2019

Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver

scientific article

Genome-wide mapping of plasma protein QTLs identifies putatively causal genes and pathways for cardiovascular disease

scientific article published in Nature Communications

Insulin promoted mobilization of GLUT4 from a perinuclear storage site requires RAB10

scientific article published on 11 November 2020

Labeling, detection and identification of newly synthesized proteomes with bioorthogonal non-canonical amino-acid tagging

scientific article published in January 2007

Linc-MYH configures INO80 to regulate muscle stem cell numbers and skeletal muscle hypertrophy

scientific article published on 22 September 2020

Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish

scientific article published on 20 November 2018

MARMoSET - Extracting Publication-ready Mass Spectrometry Metadata from RAW Files

scientific article published on 16 May 2019

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

scientific article published on January 2004

Mechanical Forces Regulate Cardiomyocyte Myofilament Maturation via the VCL-SSH1-CFL Axis

scientific article published on 05 September 2019

Metabolic and proteomic signatures of hypoglycaemia in type 2 diabetes

scientific article published on 27 December 2018

MiCEE is a ncRNA-protein complex that mediates epigenetic silencing and nucleolar organization

scientific article published on 04 June 2018

MicroRNA regulation of Cbx7 mediates a switch of Polycomb orthologs during ESC differentiation

scientific article

MicroRNAs of the miR-290-295 Family Maintain Bivalency in Mouse Embryonic Stem Cells.

scientific article published on 13 April 2016

Multi-platform Affinity Proteomics Identify Proteins Linked to Metastasis and Immune Suppression in Ovarian Cancer Plasma

scientific article published on 01 November 2019

Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system

scientific article

Myh10 deficiency leads to defective extracellular matrix remodeling and pulmonary disease

scientific article published in Nature Communications

Positioning of nucleosomes containing γ-H2AX precedes active DNA demethylation and transcription initiation

scientific article published on 16 February 2021

Proteomic profiling of human cancer pseudopodia for the identification of anti-metastatic drug candidates.

scientific article published on 11 April 2018

Proteotranscriptomics Reveal Signaling Networks in the Ovarian Cancer Microenvironment

scientific article published on 15 November 2017

Quantitative Proteomic Approaches in Mouse: Stable Isotope Incorporation by Metabolic (SILAC) or Chemical Labeling (Reductive Dimethylation) Combined with High-Resolution Mass Spectrometry

scientific article published on 02 March 2015

Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway

scientific article published on 20 July 2007

Remodeling of ER-plasma membrane contact sites but not STIM1 phosphorylation inhibits Ca2+ influx in mitosis.

scientific article published on 7 May 2019

SIRT1 Limits Adipocyte Hyperplasia through c-Myc Inhibition

scientific article published on 11 December 2015

SIRT1 promotes lipid metabolism and mitochondrial biogenesis in adipocytes and coordinates adipogenesis by targeting key enzymatic pathways

scientific article published on 14 April 2021

Screening for insulin-independent pathways that modulate glucose homeostasis identifies androgen receptor antagonists

Selective identification of newly synthesized proteins in mammalian cells using bioorthogonal noncanonical amino acid tagging (BONCAT)

scholarly article

Shear stress-induced endothelial adrenomedullin signaling regulates vascular tone and blood pressure

scientific article published on 17 June 2019

Small-molecule-mediated chemical knock-down of MuRF1/MuRF2 and attenuation of diaphragm dysfunction in chronic heart failure

scientific article published on 29 May 2019

Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins

scientific article published on 28 November 2007

Stimulation of glycolysis promotes cardiomyocyte proliferation after injury in adult zebrafish

scientific article published on 09 July 2020

Susceptibility of microtubule-associated protein 1 light chain 3β (MAP1LC3B/LC3B) knockout mice to lung injury and fibrosis

scientific article published on 20 August 2019

Targeting the High-Density Lipoprotein Proteome for the Treatment of Post-Acute Sequelae of SARS-CoV-2

scientific article published in 2024

The 2.2 Å Crystal Structure of Hsp33

The CCT chaperonin is a novel regulator of Ca signaling through modulation of Orai1 trafficking

scientific article published on 26 September 2018

The VLDL receptor regulates membrane progesterone receptor trafficking and non-genomic signaling

scientific article published on 23 May 2018

The WD40 protein Caf4p is a component of the mitochondrial fission machinery and recruits Dnm1p to mitochondria

scientific article

The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5.

scientific article

The multicellular signalling network of ovarian cancer metastases

scientific article published on 01 November 2021

Tumor-associated macrophages promote ovarian cancer cell migration by secreting transforming growth factor beta induced (TGFBI) and tenascin C

scientific article published on 20 April 2020

UBXD7 binds multiple ubiquitin ligases and implicates p97 in HIF1alpha turnover

scientific article

Using hESCs to Probe the Interaction of the Diabetes-Associated Genes CDKAL1 and MT1E.

scientific article published on May 2017

flippant-An R package for the automated analysis of fluorescence-based scramblase assays

scientific article

microRNA-mediated regulation of mTOR complex components facilitates discrimination between activation and anergy in CD4 T cells.

scientific article

multipanelfigure: Simple Assembly of Multiple Plots and Images into a Compound Figure

readat: An R package for reading and working with SomaLogic ADAT files

scientific article

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